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Intelligent high‐throughput intervention testing platform in Daphnia
We present a novel platform for testing the effects of interventions on the life‐ and healthspan of a short‐lived freshwater organism with complex behavior and physiology—the planktonic crustacean Daphnia magna. Within this platform, dozens of complex behavioral features of both routine motion and r...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8920439/ https://www.ncbi.nlm.nih.gov/pubmed/35195332 http://dx.doi.org/10.1111/acel.13571 |
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author | Cho, Yongmin Jonas‐Closs, Rachael A. Yampolsky, Lev Y. Kirschner, Marc W. Peshkin, Leonid |
author_facet | Cho, Yongmin Jonas‐Closs, Rachael A. Yampolsky, Lev Y. Kirschner, Marc W. Peshkin, Leonid |
author_sort | Cho, Yongmin |
collection | PubMed |
description | We present a novel platform for testing the effects of interventions on the life‐ and healthspan of a short‐lived freshwater organism with complex behavior and physiology—the planktonic crustacean Daphnia magna. Within this platform, dozens of complex behavioral features of both routine motion and response to stimuli are continuously quantified over large synchronized cohorts via an automated phenotyping pipeline. We build predictive machine‐learning models calibrated using chronological age and extrapolate onto phenotypic age. We further apply the model to estimate the phenotypic age under pharmacological perturbation. Our platform provides a scalable framework for drug screening and characterization in both life‐long and instant assays as illustrated using a long‐term dose‐response profile of metformin and a short‐term assay of well‐studied substances such as caffeine and alcohol. |
format | Online Article Text |
id | pubmed-8920439 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89204392022-03-18 Intelligent high‐throughput intervention testing platform in Daphnia Cho, Yongmin Jonas‐Closs, Rachael A. Yampolsky, Lev Y. Kirschner, Marc W. Peshkin, Leonid Aging Cell Research Articles We present a novel platform for testing the effects of interventions on the life‐ and healthspan of a short‐lived freshwater organism with complex behavior and physiology—the planktonic crustacean Daphnia magna. Within this platform, dozens of complex behavioral features of both routine motion and response to stimuli are continuously quantified over large synchronized cohorts via an automated phenotyping pipeline. We build predictive machine‐learning models calibrated using chronological age and extrapolate onto phenotypic age. We further apply the model to estimate the phenotypic age under pharmacological perturbation. Our platform provides a scalable framework for drug screening and characterization in both life‐long and instant assays as illustrated using a long‐term dose‐response profile of metformin and a short‐term assay of well‐studied substances such as caffeine and alcohol. John Wiley and Sons Inc. 2022-02-23 2022-03 /pmc/articles/PMC8920439/ /pubmed/35195332 http://dx.doi.org/10.1111/acel.13571 Text en © 2022 The Authors. Aging Cell published by the Anatomical Society and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Cho, Yongmin Jonas‐Closs, Rachael A. Yampolsky, Lev Y. Kirschner, Marc W. Peshkin, Leonid Intelligent high‐throughput intervention testing platform in Daphnia |
title | Intelligent high‐throughput intervention testing platform in Daphnia
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title_full | Intelligent high‐throughput intervention testing platform in Daphnia
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title_fullStr | Intelligent high‐throughput intervention testing platform in Daphnia
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title_full_unstemmed | Intelligent high‐throughput intervention testing platform in Daphnia
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title_short | Intelligent high‐throughput intervention testing platform in Daphnia
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title_sort | intelligent high‐throughput intervention testing platform in daphnia |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8920439/ https://www.ncbi.nlm.nih.gov/pubmed/35195332 http://dx.doi.org/10.1111/acel.13571 |
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