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Intelligent high‐throughput intervention testing platform in Daphnia

We present a novel platform for testing the effects of interventions on the life‐ and healthspan of a short‐lived freshwater organism with complex behavior and physiology—the planktonic crustacean Daphnia magna. Within this platform, dozens of complex behavioral features of both routine motion and r...

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Detalles Bibliográficos
Autores principales: Cho, Yongmin, Jonas‐Closs, Rachael A., Yampolsky, Lev Y., Kirschner, Marc W., Peshkin, Leonid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8920439/
https://www.ncbi.nlm.nih.gov/pubmed/35195332
http://dx.doi.org/10.1111/acel.13571
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author Cho, Yongmin
Jonas‐Closs, Rachael A.
Yampolsky, Lev Y.
Kirschner, Marc W.
Peshkin, Leonid
author_facet Cho, Yongmin
Jonas‐Closs, Rachael A.
Yampolsky, Lev Y.
Kirschner, Marc W.
Peshkin, Leonid
author_sort Cho, Yongmin
collection PubMed
description We present a novel platform for testing the effects of interventions on the life‐ and healthspan of a short‐lived freshwater organism with complex behavior and physiology—the planktonic crustacean Daphnia magna. Within this platform, dozens of complex behavioral features of both routine motion and response to stimuli are continuously quantified over large synchronized cohorts via an automated phenotyping pipeline. We build predictive machine‐learning models calibrated using chronological age and extrapolate onto phenotypic age. We further apply the model to estimate the phenotypic age under pharmacological perturbation. Our platform provides a scalable framework for drug screening and characterization in both life‐long and instant assays as illustrated using a long‐term dose‐response profile of metformin and a short‐term assay of well‐studied substances such as caffeine and alcohol.
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spelling pubmed-89204392022-03-18 Intelligent high‐throughput intervention testing platform in Daphnia Cho, Yongmin Jonas‐Closs, Rachael A. Yampolsky, Lev Y. Kirschner, Marc W. Peshkin, Leonid Aging Cell Research Articles We present a novel platform for testing the effects of interventions on the life‐ and healthspan of a short‐lived freshwater organism with complex behavior and physiology—the planktonic crustacean Daphnia magna. Within this platform, dozens of complex behavioral features of both routine motion and response to stimuli are continuously quantified over large synchronized cohorts via an automated phenotyping pipeline. We build predictive machine‐learning models calibrated using chronological age and extrapolate onto phenotypic age. We further apply the model to estimate the phenotypic age under pharmacological perturbation. Our platform provides a scalable framework for drug screening and characterization in both life‐long and instant assays as illustrated using a long‐term dose‐response profile of metformin and a short‐term assay of well‐studied substances such as caffeine and alcohol. John Wiley and Sons Inc. 2022-02-23 2022-03 /pmc/articles/PMC8920439/ /pubmed/35195332 http://dx.doi.org/10.1111/acel.13571 Text en © 2022 The Authors. Aging Cell published by the Anatomical Society and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Cho, Yongmin
Jonas‐Closs, Rachael A.
Yampolsky, Lev Y.
Kirschner, Marc W.
Peshkin, Leonid
Intelligent high‐throughput intervention testing platform in Daphnia
title Intelligent high‐throughput intervention testing platform in Daphnia
title_full Intelligent high‐throughput intervention testing platform in Daphnia
title_fullStr Intelligent high‐throughput intervention testing platform in Daphnia
title_full_unstemmed Intelligent high‐throughput intervention testing platform in Daphnia
title_short Intelligent high‐throughput intervention testing platform in Daphnia
title_sort intelligent high‐throughput intervention testing platform in daphnia
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8920439/
https://www.ncbi.nlm.nih.gov/pubmed/35195332
http://dx.doi.org/10.1111/acel.13571
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