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Towards an efficient validation of dynamical whole-brain models
Simulating the resting-state brain dynamics via mathematical whole-brain models requires an optimal selection of parameters, which determine the model’s capability to replicate empirical data. Since the parameter optimization via a grid search (GS) becomes unfeasible for high-dimensional models, we...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8921267/ https://www.ncbi.nlm.nih.gov/pubmed/35288595 http://dx.doi.org/10.1038/s41598-022-07860-7 |
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author | Wischnewski, Kevin J. Eickhoff, Simon B. Jirsa, Viktor K. Popovych, Oleksandr V. |
author_facet | Wischnewski, Kevin J. Eickhoff, Simon B. Jirsa, Viktor K. Popovych, Oleksandr V. |
author_sort | Wischnewski, Kevin J. |
collection | PubMed |
description | Simulating the resting-state brain dynamics via mathematical whole-brain models requires an optimal selection of parameters, which determine the model’s capability to replicate empirical data. Since the parameter optimization via a grid search (GS) becomes unfeasible for high-dimensional models, we evaluate several alternative approaches to maximize the correspondence between simulated and empirical functional connectivity. A dense GS serves as a benchmark to assess the performance of four optimization schemes: Nelder-Mead Algorithm (NMA), Particle Swarm Optimization (PSO), Covariance Matrix Adaptation Evolution Strategy (CMAES) and Bayesian Optimization (BO). To compare them, we employ an ensemble of coupled phase oscillators built upon individual empirical structural connectivity of 105 healthy subjects. We determine optimal model parameters from two- and three-dimensional parameter spaces and show that the overall fitting quality of the tested methods can compete with the GS. There are, however, marked differences in the required computational resources and stability properties, which we also investigate before proposing CMAES and BO as efficient alternatives to a high-dimensional GS. For the three-dimensional case, these methods generated similar results as the GS, but within less than 6% of the computation time. Our results contribute to an efficient validation of models for personalized simulations of brain dynamics. |
format | Online Article Text |
id | pubmed-8921267 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-89212672022-03-16 Towards an efficient validation of dynamical whole-brain models Wischnewski, Kevin J. Eickhoff, Simon B. Jirsa, Viktor K. Popovych, Oleksandr V. Sci Rep Article Simulating the resting-state brain dynamics via mathematical whole-brain models requires an optimal selection of parameters, which determine the model’s capability to replicate empirical data. Since the parameter optimization via a grid search (GS) becomes unfeasible for high-dimensional models, we evaluate several alternative approaches to maximize the correspondence between simulated and empirical functional connectivity. A dense GS serves as a benchmark to assess the performance of four optimization schemes: Nelder-Mead Algorithm (NMA), Particle Swarm Optimization (PSO), Covariance Matrix Adaptation Evolution Strategy (CMAES) and Bayesian Optimization (BO). To compare them, we employ an ensemble of coupled phase oscillators built upon individual empirical structural connectivity of 105 healthy subjects. We determine optimal model parameters from two- and three-dimensional parameter spaces and show that the overall fitting quality of the tested methods can compete with the GS. There are, however, marked differences in the required computational resources and stability properties, which we also investigate before proposing CMAES and BO as efficient alternatives to a high-dimensional GS. For the three-dimensional case, these methods generated similar results as the GS, but within less than 6% of the computation time. Our results contribute to an efficient validation of models for personalized simulations of brain dynamics. Nature Publishing Group UK 2022-03-14 /pmc/articles/PMC8921267/ /pubmed/35288595 http://dx.doi.org/10.1038/s41598-022-07860-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Wischnewski, Kevin J. Eickhoff, Simon B. Jirsa, Viktor K. Popovych, Oleksandr V. Towards an efficient validation of dynamical whole-brain models |
title | Towards an efficient validation of dynamical whole-brain models |
title_full | Towards an efficient validation of dynamical whole-brain models |
title_fullStr | Towards an efficient validation of dynamical whole-brain models |
title_full_unstemmed | Towards an efficient validation of dynamical whole-brain models |
title_short | Towards an efficient validation of dynamical whole-brain models |
title_sort | towards an efficient validation of dynamical whole-brain models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8921267/ https://www.ncbi.nlm.nih.gov/pubmed/35288595 http://dx.doi.org/10.1038/s41598-022-07860-7 |
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