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Pyroptosis-Related LncRNA Signatures Correlate With Lung Adenocarcinoma Prognosis
BACKGROUND: Pyroptosis is a new type of programmed cell death, accompanied by an intense inflammatory response. Previous studies have shown that pyroptosis can modify long-chain non-coding RNA (lncRNA), thereby affecting the occurrence and progression of tumors. However, the underlying role of pyrop...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8924059/ https://www.ncbi.nlm.nih.gov/pubmed/35311148 http://dx.doi.org/10.3389/fonc.2022.850943 |
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author | Huang, Hua Shi, Zijian Li, Yongwen Zhu, Guangsheng Chen, Chen Zhang, Zihe Shi, Ruifeng Su, Lianchun Cao, Peijun Pan, Zhenhua Zhang, Hongbing Liu, Minghui Liu, Hongyu Chen, Jun |
author_facet | Huang, Hua Shi, Zijian Li, Yongwen Zhu, Guangsheng Chen, Chen Zhang, Zihe Shi, Ruifeng Su, Lianchun Cao, Peijun Pan, Zhenhua Zhang, Hongbing Liu, Minghui Liu, Hongyu Chen, Jun |
author_sort | Huang, Hua |
collection | PubMed |
description | BACKGROUND: Pyroptosis is a new type of programmed cell death, accompanied by an intense inflammatory response. Previous studies have shown that pyroptosis can modify long-chain non-coding RNA (lncRNA), thereby affecting the occurrence and progression of tumors. However, the underlying role of pyroptosis-related lncRNA in lung adenocarcinoma (LUAD) remains to be elucidated. Therefore, the purpose of our study was to evaluate the prognostic value of pyrolysis-related lncRNA in patients with LUAD. METHODS: A total of 454 LUAD samples were downloaded from The Cancer Genome Atlas (TCGA) database. Pearson’s correlation coefficient was used to identify the pyroptosis-related lncRNAs. Unsupervised consensus clustering was used to identify the various LUAD molecular subtypes. A least absolute shrinkage and selection operator (LASSO) analysis was conducted to construct a prognostic signature. RESULTS: An 11-lncRNA prognostic signature out of 19 identified pyroptosis-related prognostic lncRNAs was constructed. The patients with LUAD were divided into low-risk and high-risk groups. Patients in the high-risk group had higher score values and mortality. The immune score, stromal score, and estimate score were lower in the high-risk group. The risk score was an independent predictor for OS in multivariate Cox regression analyses (HR > 1, p < 0.01). BTLA, PD-1, PD-L1, CTLA, and CD47 were lower expressed in the high-risk group. CONCLUSIONS: Our study identified an 11-pyroptosis-related lncRNA signature. These findings could further clarify the role of pyroptosis in LUAD and guide the prognosis and individualized treatment of patients. |
format | Online Article Text |
id | pubmed-8924059 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89240592022-03-17 Pyroptosis-Related LncRNA Signatures Correlate With Lung Adenocarcinoma Prognosis Huang, Hua Shi, Zijian Li, Yongwen Zhu, Guangsheng Chen, Chen Zhang, Zihe Shi, Ruifeng Su, Lianchun Cao, Peijun Pan, Zhenhua Zhang, Hongbing Liu, Minghui Liu, Hongyu Chen, Jun Front Oncol Oncology BACKGROUND: Pyroptosis is a new type of programmed cell death, accompanied by an intense inflammatory response. Previous studies have shown that pyroptosis can modify long-chain non-coding RNA (lncRNA), thereby affecting the occurrence and progression of tumors. However, the underlying role of pyroptosis-related lncRNA in lung adenocarcinoma (LUAD) remains to be elucidated. Therefore, the purpose of our study was to evaluate the prognostic value of pyrolysis-related lncRNA in patients with LUAD. METHODS: A total of 454 LUAD samples were downloaded from The Cancer Genome Atlas (TCGA) database. Pearson’s correlation coefficient was used to identify the pyroptosis-related lncRNAs. Unsupervised consensus clustering was used to identify the various LUAD molecular subtypes. A least absolute shrinkage and selection operator (LASSO) analysis was conducted to construct a prognostic signature. RESULTS: An 11-lncRNA prognostic signature out of 19 identified pyroptosis-related prognostic lncRNAs was constructed. The patients with LUAD were divided into low-risk and high-risk groups. Patients in the high-risk group had higher score values and mortality. The immune score, stromal score, and estimate score were lower in the high-risk group. The risk score was an independent predictor for OS in multivariate Cox regression analyses (HR > 1, p < 0.01). BTLA, PD-1, PD-L1, CTLA, and CD47 were lower expressed in the high-risk group. CONCLUSIONS: Our study identified an 11-pyroptosis-related lncRNA signature. These findings could further clarify the role of pyroptosis in LUAD and guide the prognosis and individualized treatment of patients. Frontiers Media S.A. 2022-03-02 /pmc/articles/PMC8924059/ /pubmed/35311148 http://dx.doi.org/10.3389/fonc.2022.850943 Text en Copyright © 2022 Huang, Shi, Li, Zhu, Chen, Zhang, Shi, Su, Cao, Pan, Zhang, Liu, Liu and Chen https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Huang, Hua Shi, Zijian Li, Yongwen Zhu, Guangsheng Chen, Chen Zhang, Zihe Shi, Ruifeng Su, Lianchun Cao, Peijun Pan, Zhenhua Zhang, Hongbing Liu, Minghui Liu, Hongyu Chen, Jun Pyroptosis-Related LncRNA Signatures Correlate With Lung Adenocarcinoma Prognosis |
title | Pyroptosis-Related LncRNA Signatures Correlate With Lung Adenocarcinoma Prognosis |
title_full | Pyroptosis-Related LncRNA Signatures Correlate With Lung Adenocarcinoma Prognosis |
title_fullStr | Pyroptosis-Related LncRNA Signatures Correlate With Lung Adenocarcinoma Prognosis |
title_full_unstemmed | Pyroptosis-Related LncRNA Signatures Correlate With Lung Adenocarcinoma Prognosis |
title_short | Pyroptosis-Related LncRNA Signatures Correlate With Lung Adenocarcinoma Prognosis |
title_sort | pyroptosis-related lncrna signatures correlate with lung adenocarcinoma prognosis |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8924059/ https://www.ncbi.nlm.nih.gov/pubmed/35311148 http://dx.doi.org/10.3389/fonc.2022.850943 |
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