Cargando…

A Benchmark Protocol for DFT Approaches and Data-Driven Models for Halide-Water Clusters

Dissolved ions in aqueous media are ubiquitous in many physicochemical processes, with a direct impact on research fields, such as chemistry, climate, biology, and industry. Ions play a crucial role in the structure of the surrounding network of water molecules as they can either weaken or strengthe...

Descripción completa

Detalles Bibliográficos
Autores principales: Rodríguez-Segundo, Raúl, Arismendi-Arrieta, Daniel J., Prosmiti, Rita
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8924895/
https://www.ncbi.nlm.nih.gov/pubmed/35268757
http://dx.doi.org/10.3390/molecules27051654
_version_ 1784669957543428096
author Rodríguez-Segundo, Raúl
Arismendi-Arrieta, Daniel J.
Prosmiti, Rita
author_facet Rodríguez-Segundo, Raúl
Arismendi-Arrieta, Daniel J.
Prosmiti, Rita
author_sort Rodríguez-Segundo, Raúl
collection PubMed
description Dissolved ions in aqueous media are ubiquitous in many physicochemical processes, with a direct impact on research fields, such as chemistry, climate, biology, and industry. Ions play a crucial role in the structure of the surrounding network of water molecules as they can either weaken or strengthen it. Gaining a thorough understanding of the underlying forces from small clusters to bulk solutions is still challenging, which motivates further investigations. Through a systematic analysis of the interaction energies obtained from high-level electronic structure methodologies, we assessed various dispersion-corrected density functional approaches, as well as ab initio-based data-driven potential models for halide ion–water clusters. We introduced an active learning scheme to automate the generation of optimally weighted datasets, required for the development of efficient bottom-up anion–water models. Using an evolutionary programming procedure, we determined optimized and reference configurations for such polarizable and first-principles-based representation of the potentials, and we analyzed their structural characteristics and energetics in comparison with estimates from DF-MP2 and DFT+D quantum chemistry computations. Moreover, we presented new benchmark datasets, considering both equilibrium and non-equilibrium configurations of higher-order species with an increasing number of water molecules up to 54 for each F, Cl, Br, and I anions, and we proposed a validation protocol to cross-check methods and approaches. In this way, we aim to improve the predictive ability of future molecular computer simulations for determining the ongoing conflicting distribution of different ions in aqueous environments, as well as the transition from nanoscale clusters to macroscopic condensed phases.
format Online
Article
Text
id pubmed-8924895
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-89248952022-03-17 A Benchmark Protocol for DFT Approaches and Data-Driven Models for Halide-Water Clusters Rodríguez-Segundo, Raúl Arismendi-Arrieta, Daniel J. Prosmiti, Rita Molecules Article Dissolved ions in aqueous media are ubiquitous in many physicochemical processes, with a direct impact on research fields, such as chemistry, climate, biology, and industry. Ions play a crucial role in the structure of the surrounding network of water molecules as they can either weaken or strengthen it. Gaining a thorough understanding of the underlying forces from small clusters to bulk solutions is still challenging, which motivates further investigations. Through a systematic analysis of the interaction energies obtained from high-level electronic structure methodologies, we assessed various dispersion-corrected density functional approaches, as well as ab initio-based data-driven potential models for halide ion–water clusters. We introduced an active learning scheme to automate the generation of optimally weighted datasets, required for the development of efficient bottom-up anion–water models. Using an evolutionary programming procedure, we determined optimized and reference configurations for such polarizable and first-principles-based representation of the potentials, and we analyzed their structural characteristics and energetics in comparison with estimates from DF-MP2 and DFT+D quantum chemistry computations. Moreover, we presented new benchmark datasets, considering both equilibrium and non-equilibrium configurations of higher-order species with an increasing number of water molecules up to 54 for each F, Cl, Br, and I anions, and we proposed a validation protocol to cross-check methods and approaches. In this way, we aim to improve the predictive ability of future molecular computer simulations for determining the ongoing conflicting distribution of different ions in aqueous environments, as well as the transition from nanoscale clusters to macroscopic condensed phases. MDPI 2022-03-02 /pmc/articles/PMC8924895/ /pubmed/35268757 http://dx.doi.org/10.3390/molecules27051654 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Rodríguez-Segundo, Raúl
Arismendi-Arrieta, Daniel J.
Prosmiti, Rita
A Benchmark Protocol for DFT Approaches and Data-Driven Models for Halide-Water Clusters
title A Benchmark Protocol for DFT Approaches and Data-Driven Models for Halide-Water Clusters
title_full A Benchmark Protocol for DFT Approaches and Data-Driven Models for Halide-Water Clusters
title_fullStr A Benchmark Protocol for DFT Approaches and Data-Driven Models for Halide-Water Clusters
title_full_unstemmed A Benchmark Protocol for DFT Approaches and Data-Driven Models for Halide-Water Clusters
title_short A Benchmark Protocol for DFT Approaches and Data-Driven Models for Halide-Water Clusters
title_sort benchmark protocol for dft approaches and data-driven models for halide-water clusters
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8924895/
https://www.ncbi.nlm.nih.gov/pubmed/35268757
http://dx.doi.org/10.3390/molecules27051654
work_keys_str_mv AT rodriguezsegundoraul abenchmarkprotocolfordftapproachesanddatadrivenmodelsforhalidewaterclusters
AT arismendiarrietadanielj abenchmarkprotocolfordftapproachesanddatadrivenmodelsforhalidewaterclusters
AT prosmitirita abenchmarkprotocolfordftapproachesanddatadrivenmodelsforhalidewaterclusters
AT rodriguezsegundoraul benchmarkprotocolfordftapproachesanddatadrivenmodelsforhalidewaterclusters
AT arismendiarrietadanielj benchmarkprotocolfordftapproachesanddatadrivenmodelsforhalidewaterclusters
AT prosmitirita benchmarkprotocolfordftapproachesanddatadrivenmodelsforhalidewaterclusters