Cargando…
Using linear and natural cubic splines, SITAR, and latent trajectory models to characterise nonlinear longitudinal growth trajectories in cohort studies
BACKGROUND: Longitudinal data analysis can improve our understanding of the influences on health trajectories across the life-course. There are a variety of statistical models which can be used, and their fitting and interpretation can be complex, particularly where there is a nonlinear trajectory....
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8925070/ https://www.ncbi.nlm.nih.gov/pubmed/35291947 http://dx.doi.org/10.1186/s12874-022-01542-8 |
_version_ | 1784669990287310848 |
---|---|
author | Elhakeem, Ahmed Hughes, Rachael A. Tilling, Kate Cousminer, Diana L. Jackowski, Stefan A. Cole, Tim J. Kwong, Alex S. F. Li, Zheyuan Grant, Struan F. A. Baxter-Jones, Adam D. G. Zemel, Babette S. Lawlor, Deborah A. |
author_facet | Elhakeem, Ahmed Hughes, Rachael A. Tilling, Kate Cousminer, Diana L. Jackowski, Stefan A. Cole, Tim J. Kwong, Alex S. F. Li, Zheyuan Grant, Struan F. A. Baxter-Jones, Adam D. G. Zemel, Babette S. Lawlor, Deborah A. |
author_sort | Elhakeem, Ahmed |
collection | PubMed |
description | BACKGROUND: Longitudinal data analysis can improve our understanding of the influences on health trajectories across the life-course. There are a variety of statistical models which can be used, and their fitting and interpretation can be complex, particularly where there is a nonlinear trajectory. Our aim was to provide an accessible guide along with applied examples to using four sophisticated modelling procedures for describing nonlinear growth trajectories. METHODS: This expository paper provides an illustrative guide to summarising nonlinear growth trajectories for repeatedly measured continuous outcomes using (i) linear spline and (ii) natural cubic spline linear mixed-effects (LME) models, (iii) Super Imposition by Translation and Rotation (SITAR) nonlinear mixed effects models, and (iv) latent trajectory models. The underlying model for each approach, their similarities and differences, and their advantages and disadvantages are described. Their application and correct interpretation of their results is illustrated by analysing repeated bone mass measures to characterise bone growth patterns and their sex differences in three cohort studies from the UK, USA, and Canada comprising 8500 individuals and 37,000 measurements from ages 5–40 years. Recommendations for choosing a modelling approach are provided along with a discussion and signposting on further modelling extensions for analysing trajectory exposures and outcomes, and multiple cohorts. RESULTS: Linear and natural cubic spline LME models and SITAR provided similar summary of the mean bone growth trajectory and growth velocity, and the sex differences in growth patterns. Growth velocity (in grams/year) peaked during adolescence, and peaked earlier in females than males e.g., mean age at peak bone mineral content accrual from multicohort SITAR models was 12.2 years in females and 13.9 years in males. Latent trajectory models (with trajectory shapes estimated using a natural cubic spline) identified up to four subgroups of individuals with distinct trajectories throughout adolescence. CONCLUSIONS: LME models with linear and natural cubic splines, SITAR, and latent trajectory models are useful for describing nonlinear growth trajectories, and these methods can be adapted for other complex traits. Choice of method depends on the research aims, complexity of the trajectory, and available data. Scripts and synthetic datasets are provided for readers to replicate trajectory modelling and visualisation using the R statistical computing software. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-022-01542-8. |
format | Online Article Text |
id | pubmed-8925070 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-89250702022-03-23 Using linear and natural cubic splines, SITAR, and latent trajectory models to characterise nonlinear longitudinal growth trajectories in cohort studies Elhakeem, Ahmed Hughes, Rachael A. Tilling, Kate Cousminer, Diana L. Jackowski, Stefan A. Cole, Tim J. Kwong, Alex S. F. Li, Zheyuan Grant, Struan F. A. Baxter-Jones, Adam D. G. Zemel, Babette S. Lawlor, Deborah A. BMC Med Res Methodol Research Article BACKGROUND: Longitudinal data analysis can improve our understanding of the influences on health trajectories across the life-course. There are a variety of statistical models which can be used, and their fitting and interpretation can be complex, particularly where there is a nonlinear trajectory. Our aim was to provide an accessible guide along with applied examples to using four sophisticated modelling procedures for describing nonlinear growth trajectories. METHODS: This expository paper provides an illustrative guide to summarising nonlinear growth trajectories for repeatedly measured continuous outcomes using (i) linear spline and (ii) natural cubic spline linear mixed-effects (LME) models, (iii) Super Imposition by Translation and Rotation (SITAR) nonlinear mixed effects models, and (iv) latent trajectory models. The underlying model for each approach, their similarities and differences, and their advantages and disadvantages are described. Their application and correct interpretation of their results is illustrated by analysing repeated bone mass measures to characterise bone growth patterns and their sex differences in three cohort studies from the UK, USA, and Canada comprising 8500 individuals and 37,000 measurements from ages 5–40 years. Recommendations for choosing a modelling approach are provided along with a discussion and signposting on further modelling extensions for analysing trajectory exposures and outcomes, and multiple cohorts. RESULTS: Linear and natural cubic spline LME models and SITAR provided similar summary of the mean bone growth trajectory and growth velocity, and the sex differences in growth patterns. Growth velocity (in grams/year) peaked during adolescence, and peaked earlier in females than males e.g., mean age at peak bone mineral content accrual from multicohort SITAR models was 12.2 years in females and 13.9 years in males. Latent trajectory models (with trajectory shapes estimated using a natural cubic spline) identified up to four subgroups of individuals with distinct trajectories throughout adolescence. CONCLUSIONS: LME models with linear and natural cubic splines, SITAR, and latent trajectory models are useful for describing nonlinear growth trajectories, and these methods can be adapted for other complex traits. Choice of method depends on the research aims, complexity of the trajectory, and available data. Scripts and synthetic datasets are provided for readers to replicate trajectory modelling and visualisation using the R statistical computing software. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-022-01542-8. BioMed Central 2022-03-15 /pmc/articles/PMC8925070/ /pubmed/35291947 http://dx.doi.org/10.1186/s12874-022-01542-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Elhakeem, Ahmed Hughes, Rachael A. Tilling, Kate Cousminer, Diana L. Jackowski, Stefan A. Cole, Tim J. Kwong, Alex S. F. Li, Zheyuan Grant, Struan F. A. Baxter-Jones, Adam D. G. Zemel, Babette S. Lawlor, Deborah A. Using linear and natural cubic splines, SITAR, and latent trajectory models to characterise nonlinear longitudinal growth trajectories in cohort studies |
title | Using linear and natural cubic splines, SITAR, and latent trajectory models to characterise nonlinear longitudinal growth trajectories in cohort studies |
title_full | Using linear and natural cubic splines, SITAR, and latent trajectory models to characterise nonlinear longitudinal growth trajectories in cohort studies |
title_fullStr | Using linear and natural cubic splines, SITAR, and latent trajectory models to characterise nonlinear longitudinal growth trajectories in cohort studies |
title_full_unstemmed | Using linear and natural cubic splines, SITAR, and latent trajectory models to characterise nonlinear longitudinal growth trajectories in cohort studies |
title_short | Using linear and natural cubic splines, SITAR, and latent trajectory models to characterise nonlinear longitudinal growth trajectories in cohort studies |
title_sort | using linear and natural cubic splines, sitar, and latent trajectory models to characterise nonlinear longitudinal growth trajectories in cohort studies |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8925070/ https://www.ncbi.nlm.nih.gov/pubmed/35291947 http://dx.doi.org/10.1186/s12874-022-01542-8 |
work_keys_str_mv | AT elhakeemahmed usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT hughesrachaela usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT tillingkate usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT cousminerdianal usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT jackowskistefana usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT coletimj usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT kwongalexsf usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT lizheyuan usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT grantstruanfa usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT baxterjonesadamdg usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT zemelbabettes usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies AT lawlordeboraha usinglinearandnaturalcubicsplinessitarandlatenttrajectorymodelstocharacterisenonlinearlongitudinalgrowthtrajectoriesincohortstudies |