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Learning accurate personalized survival models for predicting hospital discharge and mortality of COVID-19 patients

Since it emerged in December of 2019, COVID-19 has placed a huge burden on medical care in countries throughout the world, as it led to a huge number of hospitalizations and mortalities. Many medical centers were overloaded, as their intensive care units and auxiliary protection resources proved ins...

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Autores principales: Kumar, Neeraj, Qi, Shi-ang, Kuan, Li-Hao, Sun, Weijie, Zhang, Jianfei, Greiner, Russell
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8927593/
https://www.ncbi.nlm.nih.gov/pubmed/35296767
http://dx.doi.org/10.1038/s41598-022-08601-6
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author Kumar, Neeraj
Qi, Shi-ang
Kuan, Li-Hao
Sun, Weijie
Zhang, Jianfei
Greiner, Russell
author_facet Kumar, Neeraj
Qi, Shi-ang
Kuan, Li-Hao
Sun, Weijie
Zhang, Jianfei
Greiner, Russell
author_sort Kumar, Neeraj
collection PubMed
description Since it emerged in December of 2019, COVID-19 has placed a huge burden on medical care in countries throughout the world, as it led to a huge number of hospitalizations and mortalities. Many medical centers were overloaded, as their intensive care units and auxiliary protection resources proved insufficient, which made the effective allocation of medical resources an urgent matter. This study describes learned survival prediction models that could help medical professionals make effective decisions regarding patient triage and resource allocation. We created multiple data subsets from a publicly available COVID-19 epidemiological dataset to evaluate the effectiveness of various combinations of covariates—age, sex, geographic location, and chronic disease status—in learning survival models (here, “Individual Survival Distributions”; ISDs) for hospital discharge and also for death events. We then supplemented our datasets with demographic and economic information to obtain potentially more accurate survival models. Our extensive experiments compared several ISD models, using various measures. These results show that the “gradient boosting Cox machine” algorithm outperformed the competing techniques, in terms of these performance evaluation metrics, for predicting both an individual’s likelihood of hospital discharge and COVID-19 mortality. Our curated datasets and code base are available at our Github repository for reproducing the results reported in this paper and for supporting future research.
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spelling pubmed-89275932022-03-21 Learning accurate personalized survival models for predicting hospital discharge and mortality of COVID-19 patients Kumar, Neeraj Qi, Shi-ang Kuan, Li-Hao Sun, Weijie Zhang, Jianfei Greiner, Russell Sci Rep Article Since it emerged in December of 2019, COVID-19 has placed a huge burden on medical care in countries throughout the world, as it led to a huge number of hospitalizations and mortalities. Many medical centers were overloaded, as their intensive care units and auxiliary protection resources proved insufficient, which made the effective allocation of medical resources an urgent matter. This study describes learned survival prediction models that could help medical professionals make effective decisions regarding patient triage and resource allocation. We created multiple data subsets from a publicly available COVID-19 epidemiological dataset to evaluate the effectiveness of various combinations of covariates—age, sex, geographic location, and chronic disease status—in learning survival models (here, “Individual Survival Distributions”; ISDs) for hospital discharge and also for death events. We then supplemented our datasets with demographic and economic information to obtain potentially more accurate survival models. Our extensive experiments compared several ISD models, using various measures. These results show that the “gradient boosting Cox machine” algorithm outperformed the competing techniques, in terms of these performance evaluation metrics, for predicting both an individual’s likelihood of hospital discharge and COVID-19 mortality. Our curated datasets and code base are available at our Github repository for reproducing the results reported in this paper and for supporting future research. Nature Publishing Group UK 2022-03-16 /pmc/articles/PMC8927593/ /pubmed/35296767 http://dx.doi.org/10.1038/s41598-022-08601-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kumar, Neeraj
Qi, Shi-ang
Kuan, Li-Hao
Sun, Weijie
Zhang, Jianfei
Greiner, Russell
Learning accurate personalized survival models for predicting hospital discharge and mortality of COVID-19 patients
title Learning accurate personalized survival models for predicting hospital discharge and mortality of COVID-19 patients
title_full Learning accurate personalized survival models for predicting hospital discharge and mortality of COVID-19 patients
title_fullStr Learning accurate personalized survival models for predicting hospital discharge and mortality of COVID-19 patients
title_full_unstemmed Learning accurate personalized survival models for predicting hospital discharge and mortality of COVID-19 patients
title_short Learning accurate personalized survival models for predicting hospital discharge and mortality of COVID-19 patients
title_sort learning accurate personalized survival models for predicting hospital discharge and mortality of covid-19 patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8927593/
https://www.ncbi.nlm.nih.gov/pubmed/35296767
http://dx.doi.org/10.1038/s41598-022-08601-6
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