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DNA Damage Repair-Related Genes Signature for Immune Infiltration and Outcome in Cervical Cancer
Background: The mechanism of DNA damage repair plays an important role in many solid tumors represented by cervical cancer. Purpose: The purpose of this study was to explore the effect of DNA damage repair-related genes on immune function of patients with cervical cancer, and to establish and evalua...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8927729/ https://www.ncbi.nlm.nih.gov/pubmed/35309134 http://dx.doi.org/10.3389/fgene.2022.733164 |
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author | Wang, Xinghao Xu, Chen Sun, Hongzan |
author_facet | Wang, Xinghao Xu, Chen Sun, Hongzan |
author_sort | Wang, Xinghao |
collection | PubMed |
description | Background: The mechanism of DNA damage repair plays an important role in many solid tumors represented by cervical cancer. Purpose: The purpose of this study was to explore the effect of DNA damage repair-related genes on immune function of patients with cervical cancer, and to establish and evaluate a prognosis model based on DNA damage repair-related genes. Methods: In the study, we analyzed the genes related to DNA damage and repair, and obtained two subtypes (F1 and F2). We selected two groups of samples for different selection, and studied which pathways were enriched expression. For different subtypes, the immune score was explored to explain immune infiltration. We got the key genes through screening, and established the prognosis model through the key genes. These 11 key genes were correlated with the expression of common Clusters of Differentiation (CD) genes in order to explore the effects of these genes on immunity. Results: Through the Least absolute shrinkage and selection operator (LASSO) method, we screened 11 genes from 232 candidate genes as the key genes for the prognosis score. Through the Kaplan-Meier method, four genes (HAP1, MCM5, RNASEH2A, CETN2) with significant prognostic significance were screened into the final model, forming a Nomogram with C-index of 0.716 (0.649–1.0). Conclusion: In cervical cancer, DNA damage repair related genes and immune cell infection characteristics have certain association, and DNA damage repair related genes and immune cell infection characteristics can effectively predict the prognosis. |
format | Online Article Text |
id | pubmed-8927729 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89277292022-03-18 DNA Damage Repair-Related Genes Signature for Immune Infiltration and Outcome in Cervical Cancer Wang, Xinghao Xu, Chen Sun, Hongzan Front Genet Genetics Background: The mechanism of DNA damage repair plays an important role in many solid tumors represented by cervical cancer. Purpose: The purpose of this study was to explore the effect of DNA damage repair-related genes on immune function of patients with cervical cancer, and to establish and evaluate a prognosis model based on DNA damage repair-related genes. Methods: In the study, we analyzed the genes related to DNA damage and repair, and obtained two subtypes (F1 and F2). We selected two groups of samples for different selection, and studied which pathways were enriched expression. For different subtypes, the immune score was explored to explain immune infiltration. We got the key genes through screening, and established the prognosis model through the key genes. These 11 key genes were correlated with the expression of common Clusters of Differentiation (CD) genes in order to explore the effects of these genes on immunity. Results: Through the Least absolute shrinkage and selection operator (LASSO) method, we screened 11 genes from 232 candidate genes as the key genes for the prognosis score. Through the Kaplan-Meier method, four genes (HAP1, MCM5, RNASEH2A, CETN2) with significant prognostic significance were screened into the final model, forming a Nomogram with C-index of 0.716 (0.649–1.0). Conclusion: In cervical cancer, DNA damage repair related genes and immune cell infection characteristics have certain association, and DNA damage repair related genes and immune cell infection characteristics can effectively predict the prognosis. Frontiers Media S.A. 2022-03-03 /pmc/articles/PMC8927729/ /pubmed/35309134 http://dx.doi.org/10.3389/fgene.2022.733164 Text en Copyright © 2022 Wang, Xu and Sun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Wang, Xinghao Xu, Chen Sun, Hongzan DNA Damage Repair-Related Genes Signature for Immune Infiltration and Outcome in Cervical Cancer |
title | DNA Damage Repair-Related Genes Signature for Immune Infiltration and Outcome in Cervical Cancer |
title_full | DNA Damage Repair-Related Genes Signature for Immune Infiltration and Outcome in Cervical Cancer |
title_fullStr | DNA Damage Repair-Related Genes Signature for Immune Infiltration and Outcome in Cervical Cancer |
title_full_unstemmed | DNA Damage Repair-Related Genes Signature for Immune Infiltration and Outcome in Cervical Cancer |
title_short | DNA Damage Repair-Related Genes Signature for Immune Infiltration and Outcome in Cervical Cancer |
title_sort | dna damage repair-related genes signature for immune infiltration and outcome in cervical cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8927729/ https://www.ncbi.nlm.nih.gov/pubmed/35309134 http://dx.doi.org/10.3389/fgene.2022.733164 |
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