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Long Non-Coding RNAs H19 and HOTAIR Implicated in Intervertebral Disc Degeneration
Objective: Intervertebral disc degeneration (IDD) is the major cause of low back pain. We aimed to identify the key genes for IDD pathogenesis. Methods: An integrated analysis of microarray datasets of IDD archived in public Gene Expression Omnibus was performed. Bioinformatics analyses including id...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8927764/ https://www.ncbi.nlm.nih.gov/pubmed/35309146 http://dx.doi.org/10.3389/fgene.2022.843599 |
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author | Wang, Zhun Zhang, Jingwei Zheng, Wei He, Yongjin |
author_facet | Wang, Zhun Zhang, Jingwei Zheng, Wei He, Yongjin |
author_sort | Wang, Zhun |
collection | PubMed |
description | Objective: Intervertebral disc degeneration (IDD) is the major cause of low back pain. We aimed to identify the key genes for IDD pathogenesis. Methods: An integrated analysis of microarray datasets of IDD archived in public Gene Expression Omnibus was performed. Bioinformatics analyses including identification of differentially expressed mRNAs/microRNAs/long non-coding RNAs (DEMs/DEMis/DELs), pathway enrichment, and competitive endogenous RNA (ceRNA) network construction were performed to give insights into the potential functions of differentially expressed genes (DEGs, including DEMs, DEMis, and DELs). The diagnostic value of DEMis in distinguishing IDD from normal controls was evaluated through receiver operating characteristic (ROC) analysis. Results: DEGs were identified in IDD, including H19 and HOTAIR. In the DEMis–DEMs network of IDD, miR-1291, miR-4270, and miR-320b had high connectivity with targeted DEMs. Cell death biological processes and the JAK–STAT pathway were significantly enriched from targeted DEMs. The area under the curve (AUC) of 10 DEMs including miR-1273e, miR-623, miR-518b, and miR-1291 in ROC analysis was more than 0.8, which indicated that those 10 DEMs had diagnostic value in distinguishing IDD from normal individuals. Conclusions: DELs H19 and HOTAIR were related to IDD pathogenesis. Cell death biological processes and the JAK–STAT pathway might play key roles in IDD development. |
format | Online Article Text |
id | pubmed-8927764 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89277642022-03-18 Long Non-Coding RNAs H19 and HOTAIR Implicated in Intervertebral Disc Degeneration Wang, Zhun Zhang, Jingwei Zheng, Wei He, Yongjin Front Genet Genetics Objective: Intervertebral disc degeneration (IDD) is the major cause of low back pain. We aimed to identify the key genes for IDD pathogenesis. Methods: An integrated analysis of microarray datasets of IDD archived in public Gene Expression Omnibus was performed. Bioinformatics analyses including identification of differentially expressed mRNAs/microRNAs/long non-coding RNAs (DEMs/DEMis/DELs), pathway enrichment, and competitive endogenous RNA (ceRNA) network construction were performed to give insights into the potential functions of differentially expressed genes (DEGs, including DEMs, DEMis, and DELs). The diagnostic value of DEMis in distinguishing IDD from normal controls was evaluated through receiver operating characteristic (ROC) analysis. Results: DEGs were identified in IDD, including H19 and HOTAIR. In the DEMis–DEMs network of IDD, miR-1291, miR-4270, and miR-320b had high connectivity with targeted DEMs. Cell death biological processes and the JAK–STAT pathway were significantly enriched from targeted DEMs. The area under the curve (AUC) of 10 DEMs including miR-1273e, miR-623, miR-518b, and miR-1291 in ROC analysis was more than 0.8, which indicated that those 10 DEMs had diagnostic value in distinguishing IDD from normal individuals. Conclusions: DELs H19 and HOTAIR were related to IDD pathogenesis. Cell death biological processes and the JAK–STAT pathway might play key roles in IDD development. Frontiers Media S.A. 2022-03-03 /pmc/articles/PMC8927764/ /pubmed/35309146 http://dx.doi.org/10.3389/fgene.2022.843599 Text en Copyright © 2022 Wang, Zhang, Zheng and He. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Wang, Zhun Zhang, Jingwei Zheng, Wei He, Yongjin Long Non-Coding RNAs H19 and HOTAIR Implicated in Intervertebral Disc Degeneration |
title | Long Non-Coding RNAs H19 and HOTAIR Implicated in Intervertebral Disc Degeneration |
title_full | Long Non-Coding RNAs H19 and HOTAIR Implicated in Intervertebral Disc Degeneration |
title_fullStr | Long Non-Coding RNAs H19 and HOTAIR Implicated in Intervertebral Disc Degeneration |
title_full_unstemmed | Long Non-Coding RNAs H19 and HOTAIR Implicated in Intervertebral Disc Degeneration |
title_short | Long Non-Coding RNAs H19 and HOTAIR Implicated in Intervertebral Disc Degeneration |
title_sort | long non-coding rnas h19 and hotair implicated in intervertebral disc degeneration |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8927764/ https://www.ncbi.nlm.nih.gov/pubmed/35309146 http://dx.doi.org/10.3389/fgene.2022.843599 |
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