Cargando…

Effects of Sample Size on Plant Single-Cell RNA Profiling

Single-cell RNA (scRNA) profiling or scRNA-sequencing (scRNA-seq) makes it possible to parallelly investigate diverse molecular features of multiple types of cells in a given plant tissue and discover cell developmental processes. In this study, we evaluated the effects of sample size (i.e., cell nu...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chen, Hongyu, Lv, Yang, Yin, Xinxin, Chen, Xi, Chu, Qinjie, Zhu, Qian-Hao, Fan, Longjiang, Guo, Longbiao
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2021
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8929096/ https://www.ncbi.nlm.nih.gov/pubmed/34698115 http://dx.doi.org/10.3390/cimb43030119

Ejemplares similares

PlantcircBase 7.0: Full-length transcripts and conservation of plant circRNAs
por: Xu, Xiaoxu, et al.
Publicado: (2022)

Signaling pathway perturbation analysis for assessment of biological impact of cigarette smoke on lung cells
por: Chen, Hongyu, et al.
Publicado: (2021)

Large-scale identification of extracellular plant miRNAs in mammals implicates their dietary intake
por: Chen, Xi, et al.
Publicado: (2021)

The Circular RNA Profiles of Colorectal Tumor Metastatic Cells
por: Jiang, Weiqin, et al.
Publicado: (2018)

The whole chloroplast genome of Secale strictum subsp. kuprijanovii, a wild and perennial kinship to cultivated rye
por: Ding, Yuwen, et al.
Publicado: (2021)

RiceRelativesGD: a genomic database of rice relatives for rice research
por: Mao, Lingfeng, et al.
Publicado: (2019)

Bioinformatics analysis of microRNA profiles and identification of microRNA-mRNA network and biological markers in intracranial aneurysm
por: Zhao, Ming, et al.
Publicado: (2020)

PcircRNA_finder: a software for circRNA prediction in plants
por: Chen, Li, et al.
Publicado: (2016)

Lateral transfers lead to the birth of momilactone biosynthetic gene clusters in grass
por: Wu, Dongya, et al.
Publicado: (2022)

The complete chloroplast genome of weedy rice Oryza sativa f. spontanea
por: Dong, Chenfeng, et al.
Publicado: (2021)

RNA Profiling for Biomarker Discovery: Practical Considerations for Limiting Sample Sizes
por: Kelly, Danny J., et al.
Publicado: (2005)

RnaSeqSampleSize: real data based sample size estimation for RNA sequencing
por: Zhao, Shilin, et al.
Publicado: (2018)

Multi-omics molecular biomarkers and database of osteoarthritis
por: Li, Jianhua, et al.
Publicado: (2022)

Sensing of Abiotic Stress and Ionic Stress Responses in Plants
por: Zhang, Yu, et al.
Publicado: (2018)

Genome-wide identification of oil biosynthesis-related long non-coding RNAs in allopolyploid Brassica napus
por: Shen, Enhui, et al.
Publicado: (2018)

Single-cell transcriptome of Nepeta tenuifolia leaves reveal differentiation trajectories in glandular trichomes
por: Zhou, Peina, et al.
Publicado: (2022)

High-throughput single nucleus total RNA sequencing of formalin-fixed paraffin-embedded tissues by snRandom-seq
por: Xu, Ziye, et al.
Publicado: (2023)

Horizontal transfer and evolution of the biosynthetic gene cluster for benzoxazinoids in plants
por: Wu, Dongya, et al.
Publicado: (2022)

FlsnRNA-seq: protoplasting-free full-length single-nucleus RNA profiling in plants
por: Long, Yanping, et al.
Publicado: (2021)

A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)
por: Chen, Xi, et al.
Publicado: (2019)

Sample size calculations for indirect standardization
por: Wang, Yifei, et al.
Publicado: (2023)

The impact of sample size and marker selection on the study of haplotype structures
por: Sun, Xiao, et al.
Publicado: (2004)

Selection and mutation on microRNA target sequences during rice evolution
por: Guo, Xingyi, et al.
Publicado: (2008)

MicroRNA-146a Ameliorates Inflammation via TRAF6/NF-κB Pathway in Intervertebral Disc Cells
por: Lv, Feng, et al.
Publicado: (2017)

Size‐Independent Transmembrane Transporting of Single Tetrahedral DNA Nanostructures
por: Chen, Xi, et al.
Publicado: (2019)

Sample sizes in dosage investigational clinical trials: a systematic evaluation
por: Huang, Ji-Han, et al.
Publicado: (2015)

Immune profiling and prognostic model of pancreatic cancer using quantitative pathology and single-cell RNA sequencing
por: Chen, Kai, et al.
Publicado: (2023)

SCOPIT: sample size calculations for single-cell sequencing experiments
por: Davis, Alexander, et al.
Publicado: (2019)

Sample size for cluster sampling
por: Sánchez-Palomino, Bárbara Olenka, et al.
Publicado: (2017)

Relative power and sample size analysis on gene expression profiling data
por: van Iterson, M, et al.
Publicado: (2009)

Healthcare provider profiling: fixing observation period or fixing sample size?
por: Vach, Werner, et al.
Publicado: (2022)

Application of single-cell RNA sequencing on human testicular samples: a comprehensive review
por: Dong, Fan, et al.
Publicado: (2023)

Sample size and clinical trials in pediatric resuscitation
por: Edmunds, Katherine, et al.
Publicado: (2021)

Calculating Sample Size Requirements for Temporal Dynamics in Single-Cell Proteomics
por: Boekweg, Hannah, et al.
Publicado: (2021)

Assessment of codivergence of Mastreviruses with their plant hosts
por: Wu, Beilei, et al.
Publicado: (2008)

FZP determines grain size and sterile lemma fate in rice
por: Ren, Deyong, et al.
Publicado: (2018)

Biomechanical evaluation of a novel anterior transpedicular screw-plate system for anterior cervical corpectomy and fusion (ACCF): a finite element analysis
por: Huang, Shengbin, et al.
Publicado: (2023)

Sample-size determination
por: Mace, Arthur E.
Publicado: (1964)

Sample size calculation
por: Kadam, Prashant, et al.
Publicado: (2010)

Sample size calculation
por: Skaik, Younis Abed AL-Wahhab M.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_hgsqbv7ehoq3r3bcrllm0ucumf