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Queueing theory model of pentose phosphate pathway

Due to its role in maintaining the proper functioning of the cell, the pentose phosphate pathway (PPP) is one of the most important metabolic pathways. It is responsible for regulating the concentration of simple sugars and provides precursors for the synthesis of amino acids and nucleotides. In add...

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Autores principales: Kloska, Sylwester M., Pałczyński, Krzysztof, Marciniak, Tomasz, Talaśka, Tomasz, Miller, Marissa, Wysocki, Beata J., Davis, Paul, Wysocki, Tadeusz A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8930976/
https://www.ncbi.nlm.nih.gov/pubmed/35301361
http://dx.doi.org/10.1038/s41598-022-08463-y
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author Kloska, Sylwester M.
Pałczyński, Krzysztof
Marciniak, Tomasz
Talaśka, Tomasz
Miller, Marissa
Wysocki, Beata J.
Davis, Paul
Wysocki, Tadeusz A.
author_facet Kloska, Sylwester M.
Pałczyński, Krzysztof
Marciniak, Tomasz
Talaśka, Tomasz
Miller, Marissa
Wysocki, Beata J.
Davis, Paul
Wysocki, Tadeusz A.
author_sort Kloska, Sylwester M.
collection PubMed
description Due to its role in maintaining the proper functioning of the cell, the pentose phosphate pathway (PPP) is one of the most important metabolic pathways. It is responsible for regulating the concentration of simple sugars and provides precursors for the synthesis of amino acids and nucleotides. In addition, it plays a critical role in maintaining an adequate level of NADPH, which is necessary for the cell to fight oxidative stress. These reasons prompted the authors to develop a computational model, based on queueing theory, capable of simulating changes in PPP metabolites’ concentrations. The model has been validated with empirical data from tumor cells. The obtained results prove the stability and accuracy of the model. By applying queueing theory, this model can be further expanded to include successive metabolic pathways. The use of the model may accelerate research on new drugs, reduce drug costs, and reduce the reliance on laboratory animals necessary for this type of research on which new methods are tested.
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spelling pubmed-89309762022-03-21 Queueing theory model of pentose phosphate pathway Kloska, Sylwester M. Pałczyński, Krzysztof Marciniak, Tomasz Talaśka, Tomasz Miller, Marissa Wysocki, Beata J. Davis, Paul Wysocki, Tadeusz A. Sci Rep Article Due to its role in maintaining the proper functioning of the cell, the pentose phosphate pathway (PPP) is one of the most important metabolic pathways. It is responsible for regulating the concentration of simple sugars and provides precursors for the synthesis of amino acids and nucleotides. In addition, it plays a critical role in maintaining an adequate level of NADPH, which is necessary for the cell to fight oxidative stress. These reasons prompted the authors to develop a computational model, based on queueing theory, capable of simulating changes in PPP metabolites’ concentrations. The model has been validated with empirical data from tumor cells. The obtained results prove the stability and accuracy of the model. By applying queueing theory, this model can be further expanded to include successive metabolic pathways. The use of the model may accelerate research on new drugs, reduce drug costs, and reduce the reliance on laboratory animals necessary for this type of research on which new methods are tested. Nature Publishing Group UK 2022-03-17 /pmc/articles/PMC8930976/ /pubmed/35301361 http://dx.doi.org/10.1038/s41598-022-08463-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kloska, Sylwester M.
Pałczyński, Krzysztof
Marciniak, Tomasz
Talaśka, Tomasz
Miller, Marissa
Wysocki, Beata J.
Davis, Paul
Wysocki, Tadeusz A.
Queueing theory model of pentose phosphate pathway
title Queueing theory model of pentose phosphate pathway
title_full Queueing theory model of pentose phosphate pathway
title_fullStr Queueing theory model of pentose phosphate pathway
title_full_unstemmed Queueing theory model of pentose phosphate pathway
title_short Queueing theory model of pentose phosphate pathway
title_sort queueing theory model of pentose phosphate pathway
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8930976/
https://www.ncbi.nlm.nih.gov/pubmed/35301361
http://dx.doi.org/10.1038/s41598-022-08463-y
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