Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’

Toona ciliata var. pubescens is classified as Toona subgenus of Meliaceae family, which belongs to a large deciduous tree species. It is also a kind of precious timber tree species and has a certain medicinal value. Here, the first complete chloroplast genome (cpDNA) sequence of T. ciliata var. pube...

Descripción completa

Detalles Bibliográficos
Autores principales: Lu, Zhuchou, Dong, Xin, Fan, Yanru, Liu, Wenjian, Dai, Jianhua, Han, Xiaojiao, Liu, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8933019/
https://www.ncbi.nlm.nih.gov/pubmed/35311208
http://dx.doi.org/10.1080/23802359.2022.2049987
_version_ 1784671552987463680
author Lu, Zhuchou
Dong, Xin
Fan, Yanru
Liu, Wenjian
Dai, Jianhua
Han, Xiaojiao
Liu, Jun
author_facet Lu, Zhuchou
Dong, Xin
Fan, Yanru
Liu, Wenjian
Dai, Jianhua
Han, Xiaojiao
Liu, Jun
author_sort Lu, Zhuchou
collection PubMed
description Toona ciliata var. pubescens is classified as Toona subgenus of Meliaceae family, which belongs to a large deciduous tree species. It is also a kind of precious timber tree species and has a certain medicinal value. Here, the first complete chloroplast genome (cpDNA) sequence of T. ciliata var. pubescens was determined using the Illumina sequencing platform. The cpDNA genome is 159,481 bp in length, containing a large single-copy region (LSC) of 87,176 bp and a small single-copy region (SSC) of 18,381 bp, which were separated by a pair of inverted repeats (IRs) regions of 26,962 bp. The genome contains 138 genes, including 90 protein-coding genes, eight ribosomal RNA genes, and 40 transfer RNA genes. The phylogenetic analysis based on 19 cpDNA genomes showed a close relationship with Toona ciliate.
format Online
Article
Text
id pubmed-8933019
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-89330192022-03-19 Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’ Lu, Zhuchou Dong, Xin Fan, Yanru Liu, Wenjian Dai, Jianhua Han, Xiaojiao Liu, Jun Mitochondrial DNA B Resour Mitogenome Announcement Toona ciliata var. pubescens is classified as Toona subgenus of Meliaceae family, which belongs to a large deciduous tree species. It is also a kind of precious timber tree species and has a certain medicinal value. Here, the first complete chloroplast genome (cpDNA) sequence of T. ciliata var. pubescens was determined using the Illumina sequencing platform. The cpDNA genome is 159,481 bp in length, containing a large single-copy region (LSC) of 87,176 bp and a small single-copy region (SSC) of 18,381 bp, which were separated by a pair of inverted repeats (IRs) regions of 26,962 bp. The genome contains 138 genes, including 90 protein-coding genes, eight ribosomal RNA genes, and 40 transfer RNA genes. The phylogenetic analysis based on 19 cpDNA genomes showed a close relationship with Toona ciliate. Taylor & Francis 2022-03-16 /pmc/articles/PMC8933019/ /pubmed/35311208 http://dx.doi.org/10.1080/23802359.2022.2049987 Text en © 2022 Research Institute of Subtropical Forestry, Chinese Academy of Forestry. Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lu, Zhuchou
Dong, Xin
Fan, Yanru
Liu, Wenjian
Dai, Jianhua
Han, Xiaojiao
Liu, Jun
Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’
title Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’
title_full Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’
title_fullStr Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’
title_full_unstemmed Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’
title_short Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’
title_sort complete chloroplast genome of toona ciliata roem. var. pubescens (franch.) hand.-mazz (meliaceae), ‘chinese mahogany’
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8933019/
https://www.ncbi.nlm.nih.gov/pubmed/35311208
http://dx.doi.org/10.1080/23802359.2022.2049987
work_keys_str_mv AT luzhuchou completechloroplastgenomeoftoonaciliataroemvarpubescensfranchhandmazzmeliaceaechinesemahogany
AT dongxin completechloroplastgenomeoftoonaciliataroemvarpubescensfranchhandmazzmeliaceaechinesemahogany
AT fanyanru completechloroplastgenomeoftoonaciliataroemvarpubescensfranchhandmazzmeliaceaechinesemahogany
AT liuwenjian completechloroplastgenomeoftoonaciliataroemvarpubescensfranchhandmazzmeliaceaechinesemahogany
AT daijianhua completechloroplastgenomeoftoonaciliataroemvarpubescensfranchhandmazzmeliaceaechinesemahogany
AT hanxiaojiao completechloroplastgenomeoftoonaciliataroemvarpubescensfranchhandmazzmeliaceaechinesemahogany
AT liujun completechloroplastgenomeoftoonaciliataroemvarpubescensfranchhandmazzmeliaceaechinesemahogany

Ejemplares similares