Cargando…
Identification of Trueperella bernardiae isolated from peking ducks (Anas platyrhynchos domesticus) by phenotypical and genotypical investigations and by a newly developed loop-mediated isothermal amplification (LAMP) assay
Trueperella (T.) bernardiae is a well-known bacterial pathogen in infections of humans, rarely in animals. In the present study, five T. bernardiae isolates, isolated from five Peking ducks of four different farms, were identified by phenotypic properties, by matrix-assisted laser desorption/ionizat...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8933347/ https://www.ncbi.nlm.nih.gov/pubmed/34780047 http://dx.doi.org/10.1007/s12223-021-00927-4 |
_version_ | 1784671629478985728 |
---|---|
author | Ahmed, Marwa F. E. Alssahen, Mazen Lämmler, Christoph Köhler, Bernd Metzner, Martin Plötz, Madeleine Abdulmawjood, Amir |
author_facet | Ahmed, Marwa F. E. Alssahen, Mazen Lämmler, Christoph Köhler, Bernd Metzner, Martin Plötz, Madeleine Abdulmawjood, Amir |
author_sort | Ahmed, Marwa F. E. |
collection | PubMed |
description | Trueperella (T.) bernardiae is a well-known bacterial pathogen in infections of humans, rarely in animals. In the present study, five T. bernardiae isolates, isolated from five Peking ducks of four different farms, were identified by phenotypic properties, by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) analysis, and genotypically by sequencing the 16S ribosomal RNA (rRNA) gene, the superoxide dismutase A encoding gene sodA, and the glyceraldehyde-3-phosphate dehydrogenase encoding gene gap. In addition, the T. bernardiae isolates could be identified with a newly developed loop-mediated isothermal amplification (LAMP) assay based on the gyrase encoding housekeeping gene gyrA. All these tests clearly identified the T. bernardiae isolates to the species level. However, the detection of the specific gene gyrA with the newly designed LAMP assay appeared with a high sensitivity and specificity, and could help to identify this bacterial species in human and animal infections in future. The importance of the T. bernardiae isolates for the clinical condition of the ducks and for the problems at farm level remains unclear. |
format | Online Article Text |
id | pubmed-8933347 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-89333472022-04-01 Identification of Trueperella bernardiae isolated from peking ducks (Anas platyrhynchos domesticus) by phenotypical and genotypical investigations and by a newly developed loop-mediated isothermal amplification (LAMP) assay Ahmed, Marwa F. E. Alssahen, Mazen Lämmler, Christoph Köhler, Bernd Metzner, Martin Plötz, Madeleine Abdulmawjood, Amir Folia Microbiol (Praha) Original Article Trueperella (T.) bernardiae is a well-known bacterial pathogen in infections of humans, rarely in animals. In the present study, five T. bernardiae isolates, isolated from five Peking ducks of four different farms, were identified by phenotypic properties, by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) analysis, and genotypically by sequencing the 16S ribosomal RNA (rRNA) gene, the superoxide dismutase A encoding gene sodA, and the glyceraldehyde-3-phosphate dehydrogenase encoding gene gap. In addition, the T. bernardiae isolates could be identified with a newly developed loop-mediated isothermal amplification (LAMP) assay based on the gyrase encoding housekeeping gene gyrA. All these tests clearly identified the T. bernardiae isolates to the species level. However, the detection of the specific gene gyrA with the newly designed LAMP assay appeared with a high sensitivity and specificity, and could help to identify this bacterial species in human and animal infections in future. The importance of the T. bernardiae isolates for the clinical condition of the ducks and for the problems at farm level remains unclear. Springer Netherlands 2021-11-15 2022 /pmc/articles/PMC8933347/ /pubmed/34780047 http://dx.doi.org/10.1007/s12223-021-00927-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Ahmed, Marwa F. E. Alssahen, Mazen Lämmler, Christoph Köhler, Bernd Metzner, Martin Plötz, Madeleine Abdulmawjood, Amir Identification of Trueperella bernardiae isolated from peking ducks (Anas platyrhynchos domesticus) by phenotypical and genotypical investigations and by a newly developed loop-mediated isothermal amplification (LAMP) assay |
title | Identification of Trueperella bernardiae isolated from peking ducks (Anas platyrhynchos domesticus) by phenotypical and genotypical investigations and by a newly developed loop-mediated isothermal amplification (LAMP) assay |
title_full | Identification of Trueperella bernardiae isolated from peking ducks (Anas platyrhynchos domesticus) by phenotypical and genotypical investigations and by a newly developed loop-mediated isothermal amplification (LAMP) assay |
title_fullStr | Identification of Trueperella bernardiae isolated from peking ducks (Anas platyrhynchos domesticus) by phenotypical and genotypical investigations and by a newly developed loop-mediated isothermal amplification (LAMP) assay |
title_full_unstemmed | Identification of Trueperella bernardiae isolated from peking ducks (Anas platyrhynchos domesticus) by phenotypical and genotypical investigations and by a newly developed loop-mediated isothermal amplification (LAMP) assay |
title_short | Identification of Trueperella bernardiae isolated from peking ducks (Anas platyrhynchos domesticus) by phenotypical and genotypical investigations and by a newly developed loop-mediated isothermal amplification (LAMP) assay |
title_sort | identification of trueperella bernardiae isolated from peking ducks (anas platyrhynchos domesticus) by phenotypical and genotypical investigations and by a newly developed loop-mediated isothermal amplification (lamp) assay |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8933347/ https://www.ncbi.nlm.nih.gov/pubmed/34780047 http://dx.doi.org/10.1007/s12223-021-00927-4 |
work_keys_str_mv | AT ahmedmarwafe identificationoftrueperellabernardiaeisolatedfrompekingducksanasplatyrhynchosdomesticusbyphenotypicalandgenotypicalinvestigationsandbyanewlydevelopedloopmediatedisothermalamplificationlampassay AT alssahenmazen identificationoftrueperellabernardiaeisolatedfrompekingducksanasplatyrhynchosdomesticusbyphenotypicalandgenotypicalinvestigationsandbyanewlydevelopedloopmediatedisothermalamplificationlampassay AT lammlerchristoph identificationoftrueperellabernardiaeisolatedfrompekingducksanasplatyrhynchosdomesticusbyphenotypicalandgenotypicalinvestigationsandbyanewlydevelopedloopmediatedisothermalamplificationlampassay AT kohlerbernd identificationoftrueperellabernardiaeisolatedfrompekingducksanasplatyrhynchosdomesticusbyphenotypicalandgenotypicalinvestigationsandbyanewlydevelopedloopmediatedisothermalamplificationlampassay AT metznermartin identificationoftrueperellabernardiaeisolatedfrompekingducksanasplatyrhynchosdomesticusbyphenotypicalandgenotypicalinvestigationsandbyanewlydevelopedloopmediatedisothermalamplificationlampassay AT plotzmadeleine identificationoftrueperellabernardiaeisolatedfrompekingducksanasplatyrhynchosdomesticusbyphenotypicalandgenotypicalinvestigationsandbyanewlydevelopedloopmediatedisothermalamplificationlampassay AT abdulmawjoodamir identificationoftrueperellabernardiaeisolatedfrompekingducksanasplatyrhynchosdomesticusbyphenotypicalandgenotypicalinvestigationsandbyanewlydevelopedloopmediatedisothermalamplificationlampassay |