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A numerical algorithm for modeling cellular rearrangements in tissue morphogenesis
Among morphological phenomena, cellular patterns in developing sensory epithelia have gained attention in recent years. Although physical models for cellular rearrangements are well-established thanks to a large bulk of experimental work, their computational implementation lacks solid mathematical b...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8933555/ https://www.ncbi.nlm.nih.gov/pubmed/35304570 http://dx.doi.org/10.1038/s42003-022-03174-6 |
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author | Mohammad, Rhudaina Z. Murakawa, Hideki Svadlenka, Karel Togashi, Hideru |
author_facet | Mohammad, Rhudaina Z. Murakawa, Hideki Svadlenka, Karel Togashi, Hideru |
author_sort | Mohammad, Rhudaina Z. |
collection | PubMed |
description | Among morphological phenomena, cellular patterns in developing sensory epithelia have gained attention in recent years. Although physical models for cellular rearrangements are well-established thanks to a large bulk of experimental work, their computational implementation lacks solid mathematical background and involves experimentally unreachable parameters. Here we introduce a level set-based computational framework as a tool to rigorously investigate evolving cellular patterns, and study its mathematical and computational properties. We illustrate that a compelling feature of the method is its ability to correctly handle complex topology changes, including frequent cell intercalations. Combining this accurate numerical scheme with an established mathematical model, we show that the proposed framework features minimum possible number of parameters and is capable of reproducing a wide range of tissue morphological phenomena, such as cell sorting, engulfment or internalization. In particular, thanks to precise mathematical treatment of cellular intercalations, this method succeeds in simulating experimentally observed development of cellular mosaic patterns in sensory epithelia. |
format | Online Article Text |
id | pubmed-8933555 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-89335552022-04-01 A numerical algorithm for modeling cellular rearrangements in tissue morphogenesis Mohammad, Rhudaina Z. Murakawa, Hideki Svadlenka, Karel Togashi, Hideru Commun Biol Article Among morphological phenomena, cellular patterns in developing sensory epithelia have gained attention in recent years. Although physical models for cellular rearrangements are well-established thanks to a large bulk of experimental work, their computational implementation lacks solid mathematical background and involves experimentally unreachable parameters. Here we introduce a level set-based computational framework as a tool to rigorously investigate evolving cellular patterns, and study its mathematical and computational properties. We illustrate that a compelling feature of the method is its ability to correctly handle complex topology changes, including frequent cell intercalations. Combining this accurate numerical scheme with an established mathematical model, we show that the proposed framework features minimum possible number of parameters and is capable of reproducing a wide range of tissue morphological phenomena, such as cell sorting, engulfment or internalization. In particular, thanks to precise mathematical treatment of cellular intercalations, this method succeeds in simulating experimentally observed development of cellular mosaic patterns in sensory epithelia. Nature Publishing Group UK 2022-03-18 /pmc/articles/PMC8933555/ /pubmed/35304570 http://dx.doi.org/10.1038/s42003-022-03174-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Mohammad, Rhudaina Z. Murakawa, Hideki Svadlenka, Karel Togashi, Hideru A numerical algorithm for modeling cellular rearrangements in tissue morphogenesis |
title | A numerical algorithm for modeling cellular rearrangements in tissue morphogenesis |
title_full | A numerical algorithm for modeling cellular rearrangements in tissue morphogenesis |
title_fullStr | A numerical algorithm for modeling cellular rearrangements in tissue morphogenesis |
title_full_unstemmed | A numerical algorithm for modeling cellular rearrangements in tissue morphogenesis |
title_short | A numerical algorithm for modeling cellular rearrangements in tissue morphogenesis |
title_sort | numerical algorithm for modeling cellular rearrangements in tissue morphogenesis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8933555/ https://www.ncbi.nlm.nih.gov/pubmed/35304570 http://dx.doi.org/10.1038/s42003-022-03174-6 |
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