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Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients

OBJECTIVES: Myocardial infarction (MI) is a common cardiovascular disease. Histopathology is a main molecular characteristic of MI, but often, differences between various cell subsets have been neglected. Under this premise, MI-related molecular biomarkers were screened using single-cell sequencing....

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Autores principales: Zhou, Jiamin, Wen, Tong, Li, Qing, Chen, Zhixin, Peng, Xiaoping, Wei, Chunying, Wei, Yunfeng, Peng, Jingtian, Zhang, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8934393/
https://www.ncbi.nlm.nih.gov/pubmed/35317194
http://dx.doi.org/10.1155/2022/6534126
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author Zhou, Jiamin
Wen, Tong
Li, Qing
Chen, Zhixin
Peng, Xiaoping
Wei, Chunying
Wei, Yunfeng
Peng, Jingtian
Zhang, Wei
author_facet Zhou, Jiamin
Wen, Tong
Li, Qing
Chen, Zhixin
Peng, Xiaoping
Wei, Chunying
Wei, Yunfeng
Peng, Jingtian
Zhang, Wei
author_sort Zhou, Jiamin
collection PubMed
description OBJECTIVES: Myocardial infarction (MI) is a common cardiovascular disease. Histopathology is a main molecular characteristic of MI, but often, differences between various cell subsets have been neglected. Under this premise, MI-related molecular biomarkers were screened using single-cell sequencing. METHODS: This work examined immune cell abundance in normal and MI samples from GSE109048 and determined differences in the activated mast cells and activated CD4 memory T cells, resting mast cells. Weighted gene coexpression network analysis (WGCNA) demonstrated that activated CD4 memory T cells were the most closely related to the turquoise module, and 10 hub genes were screened. Single-cell sequencing data (scRNA-seq) of MI were examined. We used t-distributed stochastic neighbor embedding (t-SNE) for cell clustering. RESULTS: We obtained 8 cell subpopulations, each of which had different marker genes. 7 out of the 10 hub genes were detected by single-cell sequencing analysis. The expression quantity and proportion of the 7 genes were different in 8 cell clusters. CONCLUSION: In general, our study revealed the immune characteristics and determined 7 prognostic markers for MI at the single-cell level, providing a new understanding of the molecular characteristics and mechanism of MI.
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spelling pubmed-89343932022-03-21 Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients Zhou, Jiamin Wen, Tong Li, Qing Chen, Zhixin Peng, Xiaoping Wei, Chunying Wei, Yunfeng Peng, Jingtian Zhang, Wei Comput Math Methods Med Research Article OBJECTIVES: Myocardial infarction (MI) is a common cardiovascular disease. Histopathology is a main molecular characteristic of MI, but often, differences between various cell subsets have been neglected. Under this premise, MI-related molecular biomarkers were screened using single-cell sequencing. METHODS: This work examined immune cell abundance in normal and MI samples from GSE109048 and determined differences in the activated mast cells and activated CD4 memory T cells, resting mast cells. Weighted gene coexpression network analysis (WGCNA) demonstrated that activated CD4 memory T cells were the most closely related to the turquoise module, and 10 hub genes were screened. Single-cell sequencing data (scRNA-seq) of MI were examined. We used t-distributed stochastic neighbor embedding (t-SNE) for cell clustering. RESULTS: We obtained 8 cell subpopulations, each of which had different marker genes. 7 out of the 10 hub genes were detected by single-cell sequencing analysis. The expression quantity and proportion of the 7 genes were different in 8 cell clusters. CONCLUSION: In general, our study revealed the immune characteristics and determined 7 prognostic markers for MI at the single-cell level, providing a new understanding of the molecular characteristics and mechanism of MI. Hindawi 2022-03-12 /pmc/articles/PMC8934393/ /pubmed/35317194 http://dx.doi.org/10.1155/2022/6534126 Text en Copyright © 2022 Jiamin Zhou et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zhou, Jiamin
Wen, Tong
Li, Qing
Chen, Zhixin
Peng, Xiaoping
Wei, Chunying
Wei, Yunfeng
Peng, Jingtian
Zhang, Wei
Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients
title Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients
title_full Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients
title_fullStr Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients
title_full_unstemmed Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients
title_short Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients
title_sort single-cell sequencing revealed pivotal genes related to prognosis of myocardial infarction patients
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8934393/
https://www.ncbi.nlm.nih.gov/pubmed/35317194
http://dx.doi.org/10.1155/2022/6534126
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