Cargando…
Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients
OBJECTIVES: Myocardial infarction (MI) is a common cardiovascular disease. Histopathology is a main molecular characteristic of MI, but often, differences between various cell subsets have been neglected. Under this premise, MI-related molecular biomarkers were screened using single-cell sequencing....
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8934393/ https://www.ncbi.nlm.nih.gov/pubmed/35317194 http://dx.doi.org/10.1155/2022/6534126 |
_version_ | 1784671838504222720 |
---|---|
author | Zhou, Jiamin Wen, Tong Li, Qing Chen, Zhixin Peng, Xiaoping Wei, Chunying Wei, Yunfeng Peng, Jingtian Zhang, Wei |
author_facet | Zhou, Jiamin Wen, Tong Li, Qing Chen, Zhixin Peng, Xiaoping Wei, Chunying Wei, Yunfeng Peng, Jingtian Zhang, Wei |
author_sort | Zhou, Jiamin |
collection | PubMed |
description | OBJECTIVES: Myocardial infarction (MI) is a common cardiovascular disease. Histopathology is a main molecular characteristic of MI, but often, differences between various cell subsets have been neglected. Under this premise, MI-related molecular biomarkers were screened using single-cell sequencing. METHODS: This work examined immune cell abundance in normal and MI samples from GSE109048 and determined differences in the activated mast cells and activated CD4 memory T cells, resting mast cells. Weighted gene coexpression network analysis (WGCNA) demonstrated that activated CD4 memory T cells were the most closely related to the turquoise module, and 10 hub genes were screened. Single-cell sequencing data (scRNA-seq) of MI were examined. We used t-distributed stochastic neighbor embedding (t-SNE) for cell clustering. RESULTS: We obtained 8 cell subpopulations, each of which had different marker genes. 7 out of the 10 hub genes were detected by single-cell sequencing analysis. The expression quantity and proportion of the 7 genes were different in 8 cell clusters. CONCLUSION: In general, our study revealed the immune characteristics and determined 7 prognostic markers for MI at the single-cell level, providing a new understanding of the molecular characteristics and mechanism of MI. |
format | Online Article Text |
id | pubmed-8934393 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-89343932022-03-21 Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients Zhou, Jiamin Wen, Tong Li, Qing Chen, Zhixin Peng, Xiaoping Wei, Chunying Wei, Yunfeng Peng, Jingtian Zhang, Wei Comput Math Methods Med Research Article OBJECTIVES: Myocardial infarction (MI) is a common cardiovascular disease. Histopathology is a main molecular characteristic of MI, but often, differences between various cell subsets have been neglected. Under this premise, MI-related molecular biomarkers were screened using single-cell sequencing. METHODS: This work examined immune cell abundance in normal and MI samples from GSE109048 and determined differences in the activated mast cells and activated CD4 memory T cells, resting mast cells. Weighted gene coexpression network analysis (WGCNA) demonstrated that activated CD4 memory T cells were the most closely related to the turquoise module, and 10 hub genes were screened. Single-cell sequencing data (scRNA-seq) of MI were examined. We used t-distributed stochastic neighbor embedding (t-SNE) for cell clustering. RESULTS: We obtained 8 cell subpopulations, each of which had different marker genes. 7 out of the 10 hub genes were detected by single-cell sequencing analysis. The expression quantity and proportion of the 7 genes were different in 8 cell clusters. CONCLUSION: In general, our study revealed the immune characteristics and determined 7 prognostic markers for MI at the single-cell level, providing a new understanding of the molecular characteristics and mechanism of MI. Hindawi 2022-03-12 /pmc/articles/PMC8934393/ /pubmed/35317194 http://dx.doi.org/10.1155/2022/6534126 Text en Copyright © 2022 Jiamin Zhou et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zhou, Jiamin Wen, Tong Li, Qing Chen, Zhixin Peng, Xiaoping Wei, Chunying Wei, Yunfeng Peng, Jingtian Zhang, Wei Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients |
title | Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients |
title_full | Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients |
title_fullStr | Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients |
title_full_unstemmed | Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients |
title_short | Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients |
title_sort | single-cell sequencing revealed pivotal genes related to prognosis of myocardial infarction patients |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8934393/ https://www.ncbi.nlm.nih.gov/pubmed/35317194 http://dx.doi.org/10.1155/2022/6534126 |
work_keys_str_mv | AT zhoujiamin singlecellsequencingrevealedpivotalgenesrelatedtoprognosisofmyocardialinfarctionpatients AT wentong singlecellsequencingrevealedpivotalgenesrelatedtoprognosisofmyocardialinfarctionpatients AT liqing singlecellsequencingrevealedpivotalgenesrelatedtoprognosisofmyocardialinfarctionpatients AT chenzhixin singlecellsequencingrevealedpivotalgenesrelatedtoprognosisofmyocardialinfarctionpatients AT pengxiaoping singlecellsequencingrevealedpivotalgenesrelatedtoprognosisofmyocardialinfarctionpatients AT weichunying singlecellsequencingrevealedpivotalgenesrelatedtoprognosisofmyocardialinfarctionpatients AT weiyunfeng singlecellsequencingrevealedpivotalgenesrelatedtoprognosisofmyocardialinfarctionpatients AT pengjingtian singlecellsequencingrevealedpivotalgenesrelatedtoprognosisofmyocardialinfarctionpatients AT zhangwei singlecellsequencingrevealedpivotalgenesrelatedtoprognosisofmyocardialinfarctionpatients |