Cargando…
Big data ordination towards intensive care event count cases using fast computing GLLVMS
BACKGROUND: In heart data mining and machine learning, dimension reduction is needed to remove multicollinearity. Meanwhile, it has been proven to improve the interpretation of the parameter model. In addition, dimension reduction can also increase the time of computing in high dimensional data. MET...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8939086/ https://www.ncbi.nlm.nih.gov/pubmed/35313816 http://dx.doi.org/10.1186/s12874-022-01538-4 |
_version_ | 1784672672242728960 |
---|---|
author | Caraka, Rezzy Eko Chen, Rung-Ching Huang, Su-Wen Chiou, Shyue-Yow Gio, Prana Ugiana Pardamean, Bens |
author_facet | Caraka, Rezzy Eko Chen, Rung-Ching Huang, Su-Wen Chiou, Shyue-Yow Gio, Prana Ugiana Pardamean, Bens |
author_sort | Caraka, Rezzy Eko |
collection | PubMed |
description | BACKGROUND: In heart data mining and machine learning, dimension reduction is needed to remove multicollinearity. Meanwhile, it has been proven to improve the interpretation of the parameter model. In addition, dimension reduction can also increase the time of computing in high dimensional data. METHODS: In this paper, we perform high dimensional ordination towards event counts in intensive care hospital for Emergency Department (ED 1), First Intensive Care Unit (ICU1), Second Intensive Care Unit (ICU2), Respiratory Care Intensive Care Unit (RICU), Surgical Intensive Care Unit (SICU), Subacute Respiratory Care Unit (RCC), Trauma and Neurosurgery Intensive Care Unit (TNCU), Neonatal Intensive Care Unit (NICU) which use the Generalized Linear Latent Variable Models (GLLVM’s). RESULTS: During the analysis, we measure the performance and calculate the time computing of GLLVM by employing variational approximation and Laplace approximation, and compare the different distributions, including Negative Binomial, Poisson, Gaussian, ZIP, and Tweedie, respectively. GLLVMs (Generalized Linear Latent Variable Models), an extended version of GLMs (Generalized Linear Models) with latent variables, have fast computing time. The major challenge in latent variable modelling is that the function [Formula: see text] is not trivial to solve since the marginal likelihood involves integration over the latent variable u. CONCLUSIONS: In a nutshell, GLLVMs lead as the best performance reaching the variance of 98% comparing other methods. We get the best model negative binomial and Variational approximation, which provides the best accuracy by accuracy value of AIC, AICc, and BIC. In a nutshell, our best model is GLLVM-VA Negative Binomial with AIC 7144.07 and GLLVM-LA Negative Binomial with AIC 6955.922. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-022-01538-4. |
format | Online Article Text |
id | pubmed-8939086 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-89390862022-03-23 Big data ordination towards intensive care event count cases using fast computing GLLVMS Caraka, Rezzy Eko Chen, Rung-Ching Huang, Su-Wen Chiou, Shyue-Yow Gio, Prana Ugiana Pardamean, Bens BMC Med Res Methodol Research BACKGROUND: In heart data mining and machine learning, dimension reduction is needed to remove multicollinearity. Meanwhile, it has been proven to improve the interpretation of the parameter model. In addition, dimension reduction can also increase the time of computing in high dimensional data. METHODS: In this paper, we perform high dimensional ordination towards event counts in intensive care hospital for Emergency Department (ED 1), First Intensive Care Unit (ICU1), Second Intensive Care Unit (ICU2), Respiratory Care Intensive Care Unit (RICU), Surgical Intensive Care Unit (SICU), Subacute Respiratory Care Unit (RCC), Trauma and Neurosurgery Intensive Care Unit (TNCU), Neonatal Intensive Care Unit (NICU) which use the Generalized Linear Latent Variable Models (GLLVM’s). RESULTS: During the analysis, we measure the performance and calculate the time computing of GLLVM by employing variational approximation and Laplace approximation, and compare the different distributions, including Negative Binomial, Poisson, Gaussian, ZIP, and Tweedie, respectively. GLLVMs (Generalized Linear Latent Variable Models), an extended version of GLMs (Generalized Linear Models) with latent variables, have fast computing time. The major challenge in latent variable modelling is that the function [Formula: see text] is not trivial to solve since the marginal likelihood involves integration over the latent variable u. CONCLUSIONS: In a nutshell, GLLVMs lead as the best performance reaching the variance of 98% comparing other methods. We get the best model negative binomial and Variational approximation, which provides the best accuracy by accuracy value of AIC, AICc, and BIC. In a nutshell, our best model is GLLVM-VA Negative Binomial with AIC 7144.07 and GLLVM-LA Negative Binomial with AIC 6955.922. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-022-01538-4. BioMed Central 2022-03-21 /pmc/articles/PMC8939086/ /pubmed/35313816 http://dx.doi.org/10.1186/s12874-022-01538-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Caraka, Rezzy Eko Chen, Rung-Ching Huang, Su-Wen Chiou, Shyue-Yow Gio, Prana Ugiana Pardamean, Bens Big data ordination towards intensive care event count cases using fast computing GLLVMS |
title | Big data ordination towards intensive care event count cases using fast computing GLLVMS |
title_full | Big data ordination towards intensive care event count cases using fast computing GLLVMS |
title_fullStr | Big data ordination towards intensive care event count cases using fast computing GLLVMS |
title_full_unstemmed | Big data ordination towards intensive care event count cases using fast computing GLLVMS |
title_short | Big data ordination towards intensive care event count cases using fast computing GLLVMS |
title_sort | big data ordination towards intensive care event count cases using fast computing gllvms |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8939086/ https://www.ncbi.nlm.nih.gov/pubmed/35313816 http://dx.doi.org/10.1186/s12874-022-01538-4 |
work_keys_str_mv | AT carakarezzyeko bigdataordinationtowardsintensivecareeventcountcasesusingfastcomputinggllvms AT chenrungching bigdataordinationtowardsintensivecareeventcountcasesusingfastcomputinggllvms AT huangsuwen bigdataordinationtowardsintensivecareeventcountcasesusingfastcomputinggllvms AT chioushyueyow bigdataordinationtowardsintensivecareeventcountcasesusingfastcomputinggllvms AT giopranaugiana bigdataordinationtowardsintensivecareeventcountcasesusingfastcomputinggllvms AT pardameanbens bigdataordinationtowardsintensivecareeventcountcasesusingfastcomputinggllvms |