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Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood)
OBJECTIVE: The redbanded stink bug (RBSB), Piezodorus guildinii (Hemiptera: Pentatomidae), is native to the Caribbean Basin and is currently considered an invasive pest in Florida, Louisiana, Mississippi, and Texas in the southern United States. Although RBSB is an economically important invasive pe...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8939125/ https://www.ncbi.nlm.nih.gov/pubmed/35317820 http://dx.doi.org/10.1186/s13104-022-05924-5 |
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author | Saha, Surya Allen, K. Clint Mueller, Lukas A. Reddy, Gadi V. P. Perera, Omaththage P. |
author_facet | Saha, Surya Allen, K. Clint Mueller, Lukas A. Reddy, Gadi V. P. Perera, Omaththage P. |
author_sort | Saha, Surya |
collection | PubMed |
description | OBJECTIVE: The redbanded stink bug (RBSB), Piezodorus guildinii (Hemiptera: Pentatomidae), is native to the Caribbean Basin and is currently considered an invasive pest in Florida, Louisiana, Mississippi, and Texas in the southern United States. Although RBSB is an economically important invasive pest in the USA, relatively few studies have been conducted to understand molecular mechanisms, population genetic structure, and the genetic basis of resistance to insecticides. The objective of this work was to obtain a high-quality genome assembly to develop genomic resources to conduct population genetic, genomic, and physiological studies of the RBSB. RESULTS: The genome of RBSB was sequenced with Pacific Biosciences technology followed by two rounds of scaffolding using Chicago libraries and HiC proximity ligation to obtain a high-quality assembly. The genome assembly contained 800 scaffolds larger than 1 kbp and the N50 was 170.84 Mbp. The largest scaffold was 222.22 Mbp and 90% of the genome was included in the 7 scaffolds larger than 118 Mbp. The number of megabase scaffolds also matched the number of chromosomes in this insect. The genome sequence will facilitate the development of resources to conduct studies on genetics, transcriptomics, and physiology of RBSB. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-022-05924-5. |
format | Online Article Text |
id | pubmed-8939125 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-89391252022-03-23 Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood) Saha, Surya Allen, K. Clint Mueller, Lukas A. Reddy, Gadi V. P. Perera, Omaththage P. BMC Res Notes Research Note OBJECTIVE: The redbanded stink bug (RBSB), Piezodorus guildinii (Hemiptera: Pentatomidae), is native to the Caribbean Basin and is currently considered an invasive pest in Florida, Louisiana, Mississippi, and Texas in the southern United States. Although RBSB is an economically important invasive pest in the USA, relatively few studies have been conducted to understand molecular mechanisms, population genetic structure, and the genetic basis of resistance to insecticides. The objective of this work was to obtain a high-quality genome assembly to develop genomic resources to conduct population genetic, genomic, and physiological studies of the RBSB. RESULTS: The genome of RBSB was sequenced with Pacific Biosciences technology followed by two rounds of scaffolding using Chicago libraries and HiC proximity ligation to obtain a high-quality assembly. The genome assembly contained 800 scaffolds larger than 1 kbp and the N50 was 170.84 Mbp. The largest scaffold was 222.22 Mbp and 90% of the genome was included in the 7 scaffolds larger than 118 Mbp. The number of megabase scaffolds also matched the number of chromosomes in this insect. The genome sequence will facilitate the development of resources to conduct studies on genetics, transcriptomics, and physiology of RBSB. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-022-05924-5. BioMed Central 2022-03-22 /pmc/articles/PMC8939125/ /pubmed/35317820 http://dx.doi.org/10.1186/s13104-022-05924-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Note Saha, Surya Allen, K. Clint Mueller, Lukas A. Reddy, Gadi V. P. Perera, Omaththage P. Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood) |
title | Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood) |
title_full | Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood) |
title_fullStr | Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood) |
title_full_unstemmed | Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood) |
title_short | Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood) |
title_sort | chromosome length genome assembly of the redbanded stink bug, piezodorus guildinii (westwood) |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8939125/ https://www.ncbi.nlm.nih.gov/pubmed/35317820 http://dx.doi.org/10.1186/s13104-022-05924-5 |
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