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Fast Characterization of Inducible Regions of Atrial Fibrillation Models With Multi-Fidelity Gaussian Process Classification

Computational models of atrial fibrillation have successfully been used to predict optimal ablation sites. A critical step to assess the effect of an ablation pattern is to pace the model from different, potentially random, locations to determine whether arrhythmias can be induced in the atria. In t...

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Autores principales: Gander, Lia, Pezzuto, Simone, Gharaviri, Ali, Krause, Rolf, Perdikaris, Paris, Sahli Costabal, Francisco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8940533/
https://www.ncbi.nlm.nih.gov/pubmed/35330935
http://dx.doi.org/10.3389/fphys.2022.757159
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author Gander, Lia
Pezzuto, Simone
Gharaviri, Ali
Krause, Rolf
Perdikaris, Paris
Sahli Costabal, Francisco
author_facet Gander, Lia
Pezzuto, Simone
Gharaviri, Ali
Krause, Rolf
Perdikaris, Paris
Sahli Costabal, Francisco
author_sort Gander, Lia
collection PubMed
description Computational models of atrial fibrillation have successfully been used to predict optimal ablation sites. A critical step to assess the effect of an ablation pattern is to pace the model from different, potentially random, locations to determine whether arrhythmias can be induced in the atria. In this work, we propose to use multi-fidelity Gaussian process classification on Riemannian manifolds to efficiently determine the regions in the atria where arrhythmias are inducible. We build a probabilistic classifier that operates directly on the atrial surface. We take advantage of lower resolution models to explore the atrial surface and combine seamlessly with high-resolution models to identify regions of inducibility. We test our methodology in 9 different cases, with different levels of fibrosis and ablation treatments, totalling 1,800 high resolution and 900 low resolution simulations of atrial fibrillation. When trained with 40 samples, our multi-fidelity classifier that combines low and high resolution models, shows a balanced accuracy that is, on average, 5.7% higher than a nearest neighbor classifier. We hope that this new technique will allow faster and more precise clinical applications of computational models for atrial fibrillation. All data and code accompanying this manuscript will be made publicly available at: https://github.com/fsahli/AtrialMFclass.
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spelling pubmed-89405332022-03-23 Fast Characterization of Inducible Regions of Atrial Fibrillation Models With Multi-Fidelity Gaussian Process Classification Gander, Lia Pezzuto, Simone Gharaviri, Ali Krause, Rolf Perdikaris, Paris Sahli Costabal, Francisco Front Physiol Physiology Computational models of atrial fibrillation have successfully been used to predict optimal ablation sites. A critical step to assess the effect of an ablation pattern is to pace the model from different, potentially random, locations to determine whether arrhythmias can be induced in the atria. In this work, we propose to use multi-fidelity Gaussian process classification on Riemannian manifolds to efficiently determine the regions in the atria where arrhythmias are inducible. We build a probabilistic classifier that operates directly on the atrial surface. We take advantage of lower resolution models to explore the atrial surface and combine seamlessly with high-resolution models to identify regions of inducibility. We test our methodology in 9 different cases, with different levels of fibrosis and ablation treatments, totalling 1,800 high resolution and 900 low resolution simulations of atrial fibrillation. When trained with 40 samples, our multi-fidelity classifier that combines low and high resolution models, shows a balanced accuracy that is, on average, 5.7% higher than a nearest neighbor classifier. We hope that this new technique will allow faster and more precise clinical applications of computational models for atrial fibrillation. All data and code accompanying this manuscript will be made publicly available at: https://github.com/fsahli/AtrialMFclass. Frontiers Media S.A. 2022-03-07 /pmc/articles/PMC8940533/ /pubmed/35330935 http://dx.doi.org/10.3389/fphys.2022.757159 Text en Copyright © 2022 Gander, Pezzuto, Gharaviri, Krause, Perdikaris and Sahli Costabal. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Physiology
Gander, Lia
Pezzuto, Simone
Gharaviri, Ali
Krause, Rolf
Perdikaris, Paris
Sahli Costabal, Francisco
Fast Characterization of Inducible Regions of Atrial Fibrillation Models With Multi-Fidelity Gaussian Process Classification
title Fast Characterization of Inducible Regions of Atrial Fibrillation Models With Multi-Fidelity Gaussian Process Classification
title_full Fast Characterization of Inducible Regions of Atrial Fibrillation Models With Multi-Fidelity Gaussian Process Classification
title_fullStr Fast Characterization of Inducible Regions of Atrial Fibrillation Models With Multi-Fidelity Gaussian Process Classification
title_full_unstemmed Fast Characterization of Inducible Regions of Atrial Fibrillation Models With Multi-Fidelity Gaussian Process Classification
title_short Fast Characterization of Inducible Regions of Atrial Fibrillation Models With Multi-Fidelity Gaussian Process Classification
title_sort fast characterization of inducible regions of atrial fibrillation models with multi-fidelity gaussian process classification
topic Physiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8940533/
https://www.ncbi.nlm.nih.gov/pubmed/35330935
http://dx.doi.org/10.3389/fphys.2022.757159
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