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Human-level COVID-19 diagnosis from low-dose CT scans using a two-stage time-distributed capsule network

Reverse transcription-polymerase chain reaction is currently the gold standard in COVID-19 diagnosis. It can, however, take days to provide the diagnosis, and false negative rate is relatively high. Imaging, in particular chest computed tomography (CT), can assist with diagnosis and assessment of th...

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Autores principales: Afshar, Parnian, Rafiee, Moezedin Javad, Naderkhani, Farnoosh, Heidarian, Shahin, Enshaei, Nastaran, Oikonomou, Anastasia, Babaki Fard, Faranak, Anconina, Reut, Farahani, Keyvan, Plataniotis, Konstantinos N., Mohammadi, Arash
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8940967/
https://www.ncbi.nlm.nih.gov/pubmed/35318368
http://dx.doi.org/10.1038/s41598-022-08796-8
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author Afshar, Parnian
Rafiee, Moezedin Javad
Naderkhani, Farnoosh
Heidarian, Shahin
Enshaei, Nastaran
Oikonomou, Anastasia
Babaki Fard, Faranak
Anconina, Reut
Farahani, Keyvan
Plataniotis, Konstantinos N.
Mohammadi, Arash
author_facet Afshar, Parnian
Rafiee, Moezedin Javad
Naderkhani, Farnoosh
Heidarian, Shahin
Enshaei, Nastaran
Oikonomou, Anastasia
Babaki Fard, Faranak
Anconina, Reut
Farahani, Keyvan
Plataniotis, Konstantinos N.
Mohammadi, Arash
author_sort Afshar, Parnian
collection PubMed
description Reverse transcription-polymerase chain reaction is currently the gold standard in COVID-19 diagnosis. It can, however, take days to provide the diagnosis, and false negative rate is relatively high. Imaging, in particular chest computed tomography (CT), can assist with diagnosis and assessment of this disease. Nevertheless, it is shown that standard dose CT scan gives significant radiation burden to patients, especially those in need of multiple scans. In this study, we consider low-dose and ultra-low-dose (LDCT and ULDCT) scan protocols that reduce the radiation exposure close to that of a single X-ray, while maintaining an acceptable resolution for diagnosis purposes. Since thoracic radiology expertise may not be widely available during the pandemic, we develop an Artificial Intelligence (AI)-based framework using a collected dataset of LDCT/ULDCT scans, to study the hypothesis that the AI model can provide human-level performance. The AI model uses a two stage capsule network architecture and can rapidly classify COVID-19, community acquired pneumonia (CAP), and normal cases, using LDCT/ULDCT scans. Based on a cross validation, the AI model achieves COVID-19 sensitivity of [Formula: see text] , CAP sensitivity of [Formula: see text] , normal cases sensitivity (specificity) of [Formula: see text] , and accuracy of [Formula: see text] . By incorporating clinical data (demographic and symptoms), the performance further improves to COVID-19 sensitivity of [Formula: see text] , CAP sensitivity of [Formula: see text] , normal cases sensitivity (specificity) of [Formula: see text] , and accuracy of [Formula: see text] . The proposed AI model achieves human-level diagnosis based on the LDCT/ULDCT scans with reduced radiation exposure. We believe that the proposed AI model has the potential to assist the radiologists to accurately and promptly diagnose COVID-19 infection and help control the transmission chain during the pandemic.
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spelling pubmed-89409672022-03-28 Human-level COVID-19 diagnosis from low-dose CT scans using a two-stage time-distributed capsule network Afshar, Parnian Rafiee, Moezedin Javad Naderkhani, Farnoosh Heidarian, Shahin Enshaei, Nastaran Oikonomou, Anastasia Babaki Fard, Faranak Anconina, Reut Farahani, Keyvan Plataniotis, Konstantinos N. Mohammadi, Arash Sci Rep Article Reverse transcription-polymerase chain reaction is currently the gold standard in COVID-19 diagnosis. It can, however, take days to provide the diagnosis, and false negative rate is relatively high. Imaging, in particular chest computed tomography (CT), can assist with diagnosis and assessment of this disease. Nevertheless, it is shown that standard dose CT scan gives significant radiation burden to patients, especially those in need of multiple scans. In this study, we consider low-dose and ultra-low-dose (LDCT and ULDCT) scan protocols that reduce the radiation exposure close to that of a single X-ray, while maintaining an acceptable resolution for diagnosis purposes. Since thoracic radiology expertise may not be widely available during the pandemic, we develop an Artificial Intelligence (AI)-based framework using a collected dataset of LDCT/ULDCT scans, to study the hypothesis that the AI model can provide human-level performance. The AI model uses a two stage capsule network architecture and can rapidly classify COVID-19, community acquired pneumonia (CAP), and normal cases, using LDCT/ULDCT scans. Based on a cross validation, the AI model achieves COVID-19 sensitivity of [Formula: see text] , CAP sensitivity of [Formula: see text] , normal cases sensitivity (specificity) of [Formula: see text] , and accuracy of [Formula: see text] . By incorporating clinical data (demographic and symptoms), the performance further improves to COVID-19 sensitivity of [Formula: see text] , CAP sensitivity of [Formula: see text] , normal cases sensitivity (specificity) of [Formula: see text] , and accuracy of [Formula: see text] . The proposed AI model achieves human-level diagnosis based on the LDCT/ULDCT scans with reduced radiation exposure. We believe that the proposed AI model has the potential to assist the radiologists to accurately and promptly diagnose COVID-19 infection and help control the transmission chain during the pandemic. Nature Publishing Group UK 2022-03-22 /pmc/articles/PMC8940967/ /pubmed/35318368 http://dx.doi.org/10.1038/s41598-022-08796-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Afshar, Parnian
Rafiee, Moezedin Javad
Naderkhani, Farnoosh
Heidarian, Shahin
Enshaei, Nastaran
Oikonomou, Anastasia
Babaki Fard, Faranak
Anconina, Reut
Farahani, Keyvan
Plataniotis, Konstantinos N.
Mohammadi, Arash
Human-level COVID-19 diagnosis from low-dose CT scans using a two-stage time-distributed capsule network
title Human-level COVID-19 diagnosis from low-dose CT scans using a two-stage time-distributed capsule network
title_full Human-level COVID-19 diagnosis from low-dose CT scans using a two-stage time-distributed capsule network
title_fullStr Human-level COVID-19 diagnosis from low-dose CT scans using a two-stage time-distributed capsule network
title_full_unstemmed Human-level COVID-19 diagnosis from low-dose CT scans using a two-stage time-distributed capsule network
title_short Human-level COVID-19 diagnosis from low-dose CT scans using a two-stage time-distributed capsule network
title_sort human-level covid-19 diagnosis from low-dose ct scans using a two-stage time-distributed capsule network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8940967/
https://www.ncbi.nlm.nih.gov/pubmed/35318368
http://dx.doi.org/10.1038/s41598-022-08796-8
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