The complete chloroplast genome of Sophora davidii (Fabaceae) and its phylogenetic implications

Sophora davidii (Franch.) Pavol. is a deciduous or evergreen shrubs belonging to the genus Sophora, Fabaceae. The roots of S. davidii have been traditionally used as a medicinal herb in China to clear internal heat, relieve sore throat, and reduce swelling. Here we sequenced the whole genome of the...

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Autores principales: Sun, Huigai, Han, Xiaowei, Ma, Donglai, Li, Yang, Kang, Tian, Sun, Ruipeng, Zheng, Yuguang, Song, Junna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8942534/
https://www.ncbi.nlm.nih.gov/pubmed/35342795
http://dx.doi.org/10.1080/23802359.2021.1999187
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author Sun, Huigai
Han, Xiaowei
Ma, Donglai
Li, Yang
Kang, Tian
Sun, Ruipeng
Zheng, Yuguang
Song, Junna
author_facet Sun, Huigai
Han, Xiaowei
Ma, Donglai
Li, Yang
Kang, Tian
Sun, Ruipeng
Zheng, Yuguang
Song, Junna
author_sort Sun, Huigai
collection PubMed
description Sophora davidii (Franch.) Pavol. is a deciduous or evergreen shrubs belonging to the genus Sophora, Fabaceae. The roots of S. davidii have been traditionally used as a medicinal herb in China to clear internal heat, relieve sore throat, and reduce swelling. Here we sequenced the whole genome of the chloroplast of S. davidii. The complete length of the chloroplast genome in S. davidii is 153,584 bp, containing a large single-copy region of 83,930 bp, a small single-copy region of 15,008 bp, and a pair of inverted repeats regions of 25,823 bp. The total guanine-cytosine (GC) percentage of the chloroplast genome was 36.7%. A total of 131 genes were annotated from the chloroplast genome of S. davidii, including 85 protein-coding genes, 8 rRNA genes and 38 tRNA genes. The phylogenetic analysis showed that S. davidii is closely related to the other three species of genus Sophora.
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spelling pubmed-89425342022-03-24 The complete chloroplast genome of Sophora davidii (Fabaceae) and its phylogenetic implications Sun, Huigai Han, Xiaowei Ma, Donglai Li, Yang Kang, Tian Sun, Ruipeng Zheng, Yuguang Song, Junna Mitochondrial DNA B Resour Mitogenome Announcement Sophora davidii (Franch.) Pavol. is a deciduous or evergreen shrubs belonging to the genus Sophora, Fabaceae. The roots of S. davidii have been traditionally used as a medicinal herb in China to clear internal heat, relieve sore throat, and reduce swelling. Here we sequenced the whole genome of the chloroplast of S. davidii. The complete length of the chloroplast genome in S. davidii is 153,584 bp, containing a large single-copy region of 83,930 bp, a small single-copy region of 15,008 bp, and a pair of inverted repeats regions of 25,823 bp. The total guanine-cytosine (GC) percentage of the chloroplast genome was 36.7%. A total of 131 genes were annotated from the chloroplast genome of S. davidii, including 85 protein-coding genes, 8 rRNA genes and 38 tRNA genes. The phylogenetic analysis showed that S. davidii is closely related to the other three species of genus Sophora. Taylor & Francis 2022-03-17 /pmc/articles/PMC8942534/ /pubmed/35342795 http://dx.doi.org/10.1080/23802359.2021.1999187 Text en © 2022 Hebei University of Chinese Medicine. Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Sun, Huigai
Han, Xiaowei
Ma, Donglai
Li, Yang
Kang, Tian
Sun, Ruipeng
Zheng, Yuguang
Song, Junna
The complete chloroplast genome of Sophora davidii (Fabaceae) and its phylogenetic implications
title The complete chloroplast genome of Sophora davidii (Fabaceae) and its phylogenetic implications
title_full The complete chloroplast genome of Sophora davidii (Fabaceae) and its phylogenetic implications
title_fullStr The complete chloroplast genome of Sophora davidii (Fabaceae) and its phylogenetic implications
title_full_unstemmed The complete chloroplast genome of Sophora davidii (Fabaceae) and its phylogenetic implications
title_short The complete chloroplast genome of Sophora davidii (Fabaceae) and its phylogenetic implications
title_sort complete chloroplast genome of sophora davidii (fabaceae) and its phylogenetic implications
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8942534/
https://www.ncbi.nlm.nih.gov/pubmed/35342795
http://dx.doi.org/10.1080/23802359.2021.1999187
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