Cargando…

Multi-scanner and multi-modal lumbar vertebral body and intervertebral disc segmentation database

Magnetic resonance imaging (MRI) is widely utilized for diagnosing and monitoring of spinal disorders. For a number of applications, particularly those related to quantitative MRI, an essential step towards achieving reliable and objective measurements is the segmentation of the examined structures....

Descripción completa

Detalles Bibliográficos
Autores principales: Khalil, Yasmina Al, Becherucci, Edoardo A., Kirschke, Jan S., Karampinos, Dimitrios C., Breeuwer, Marcel, Baum, Thomas, Sollmann, Nico
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8943029/
https://www.ncbi.nlm.nih.gov/pubmed/35322028
http://dx.doi.org/10.1038/s41597-022-01222-8
_version_ 1784673431375052800
author Khalil, Yasmina Al
Becherucci, Edoardo A.
Kirschke, Jan S.
Karampinos, Dimitrios C.
Breeuwer, Marcel
Baum, Thomas
Sollmann, Nico
author_facet Khalil, Yasmina Al
Becherucci, Edoardo A.
Kirschke, Jan S.
Karampinos, Dimitrios C.
Breeuwer, Marcel
Baum, Thomas
Sollmann, Nico
author_sort Khalil, Yasmina Al
collection PubMed
description Magnetic resonance imaging (MRI) is widely utilized for diagnosing and monitoring of spinal disorders. For a number of applications, particularly those related to quantitative MRI, an essential step towards achieving reliable and objective measurements is the segmentation of the examined structures. Performed manually, such process is time-consuming and prone to errors, posing a bottleneck to its clinical applicability. A more efficient analysis would be achieved by automating a segmentation process. However, routine spine MRI acquisitions pose several challenges for achieving robust and accurate segmentations, due to varying MRI acquisition characteristics occurring in data acquired from different sites. Moreover, heterogeneous annotated datasets, collected from multiple scanners with different pulse sequence protocols, are limited. Thus, we present a manually segmented lumbar spine MRI database containing a wide range of data obtained from multiple scanners and pulse sequences, with segmentations of lumbar vertebral bodies and intervertebral discs. The database is intended for the use in developing and testing of automated lumbar spine segmentation algorithms in multi-domain scenarios.
format Online
Article
Text
id pubmed-8943029
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-89430292022-04-08 Multi-scanner and multi-modal lumbar vertebral body and intervertebral disc segmentation database Khalil, Yasmina Al Becherucci, Edoardo A. Kirschke, Jan S. Karampinos, Dimitrios C. Breeuwer, Marcel Baum, Thomas Sollmann, Nico Sci Data Data Descriptor Magnetic resonance imaging (MRI) is widely utilized for diagnosing and monitoring of spinal disorders. For a number of applications, particularly those related to quantitative MRI, an essential step towards achieving reliable and objective measurements is the segmentation of the examined structures. Performed manually, such process is time-consuming and prone to errors, posing a bottleneck to its clinical applicability. A more efficient analysis would be achieved by automating a segmentation process. However, routine spine MRI acquisitions pose several challenges for achieving robust and accurate segmentations, due to varying MRI acquisition characteristics occurring in data acquired from different sites. Moreover, heterogeneous annotated datasets, collected from multiple scanners with different pulse sequence protocols, are limited. Thus, we present a manually segmented lumbar spine MRI database containing a wide range of data obtained from multiple scanners and pulse sequences, with segmentations of lumbar vertebral bodies and intervertebral discs. The database is intended for the use in developing and testing of automated lumbar spine segmentation algorithms in multi-domain scenarios. Nature Publishing Group UK 2022-03-23 /pmc/articles/PMC8943029/ /pubmed/35322028 http://dx.doi.org/10.1038/s41597-022-01222-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Khalil, Yasmina Al
Becherucci, Edoardo A.
Kirschke, Jan S.
Karampinos, Dimitrios C.
Breeuwer, Marcel
Baum, Thomas
Sollmann, Nico
Multi-scanner and multi-modal lumbar vertebral body and intervertebral disc segmentation database
title Multi-scanner and multi-modal lumbar vertebral body and intervertebral disc segmentation database
title_full Multi-scanner and multi-modal lumbar vertebral body and intervertebral disc segmentation database
title_fullStr Multi-scanner and multi-modal lumbar vertebral body and intervertebral disc segmentation database
title_full_unstemmed Multi-scanner and multi-modal lumbar vertebral body and intervertebral disc segmentation database
title_short Multi-scanner and multi-modal lumbar vertebral body and intervertebral disc segmentation database
title_sort multi-scanner and multi-modal lumbar vertebral body and intervertebral disc segmentation database
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8943029/
https://www.ncbi.nlm.nih.gov/pubmed/35322028
http://dx.doi.org/10.1038/s41597-022-01222-8
work_keys_str_mv AT khalilyasminaal multiscannerandmultimodallumbarvertebralbodyandintervertebraldiscsegmentationdatabase
AT becherucciedoardoa multiscannerandmultimodallumbarvertebralbodyandintervertebraldiscsegmentationdatabase
AT kirschkejans multiscannerandmultimodallumbarvertebralbodyandintervertebraldiscsegmentationdatabase
AT karampinosdimitriosc multiscannerandmultimodallumbarvertebralbodyandintervertebraldiscsegmentationdatabase
AT breeuwermarcel multiscannerandmultimodallumbarvertebralbodyandintervertebraldiscsegmentationdatabase
AT baumthomas multiscannerandmultimodallumbarvertebralbodyandintervertebraldiscsegmentationdatabase
AT sollmannnico multiscannerandmultimodallumbarvertebralbodyandintervertebraldiscsegmentationdatabase