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Outstanding prognostic value of novel ferroptosis-related genes in chemoresistance osteosarcoma patients
Osteosarcoma (OS) is the most common bone-derived tumor, and chemoresistance is a pivotal factor in the poor prognosis of patients with OS. Ferroptosis, as an emerging modality of regulated cell death, has demonstrated potential value in tumor chemoresistance studies. Through the gene expression omn...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8943205/ https://www.ncbi.nlm.nih.gov/pubmed/35322804 http://dx.doi.org/10.1038/s41598-022-09080-5 |
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author | Zhao, Jiazheng Zhao, Yi Ma, Xiaowei Feng, Helin Jia, Litao |
author_facet | Zhao, Jiazheng Zhao, Yi Ma, Xiaowei Feng, Helin Jia, Litao |
author_sort | Zhao, Jiazheng |
collection | PubMed |
description | Osteosarcoma (OS) is the most common bone-derived tumor, and chemoresistance is a pivotal factor in the poor prognosis of patients with OS. Ferroptosis, as an emerging modality of regulated cell death, has demonstrated potential value in tumor chemoresistance studies. Through the gene expression omnibus database in conjunction with the FerrDb database, we identified novel ferroptosis-related differentially expressed genes (DEGs) involving chemoresistance in OS patients. Subsequently, enrichment analysis, protein–protein interaction network analysis and survival analysis were performed sequentially to recognize the hub genes and ultimately to construct a predictive model. The model constructed from the TARGET database was exhibited in a nomogram and assessed by calibration curves. The prognostic value of the model and hub genes was validated separately by an independent cohort. Twenty-two ferroptosis-related DEGs were identified, including 16 up-regulated and 6 down-regulated. Among them, expressions of CBS, COCS1, EGFR, as hub genes, were significantly associated with the prognosis of OS patients and were evidenced as independent prognostic factors. An efficient prognostic model covering hub gene expressions and clinical variables was developed and validated. Combining the results of hub genes in differential analysis, the actions of hub genes in ferroptosis, and the prognostic relevance of hub genes in patients, we revealed that CBS, SOCS1 and EGFR might play essential roles in OS and its chemoresistance with potential research and clinical value. |
format | Online Article Text |
id | pubmed-8943205 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-89432052022-03-28 Outstanding prognostic value of novel ferroptosis-related genes in chemoresistance osteosarcoma patients Zhao, Jiazheng Zhao, Yi Ma, Xiaowei Feng, Helin Jia, Litao Sci Rep Article Osteosarcoma (OS) is the most common bone-derived tumor, and chemoresistance is a pivotal factor in the poor prognosis of patients with OS. Ferroptosis, as an emerging modality of regulated cell death, has demonstrated potential value in tumor chemoresistance studies. Through the gene expression omnibus database in conjunction with the FerrDb database, we identified novel ferroptosis-related differentially expressed genes (DEGs) involving chemoresistance in OS patients. Subsequently, enrichment analysis, protein–protein interaction network analysis and survival analysis were performed sequentially to recognize the hub genes and ultimately to construct a predictive model. The model constructed from the TARGET database was exhibited in a nomogram and assessed by calibration curves. The prognostic value of the model and hub genes was validated separately by an independent cohort. Twenty-two ferroptosis-related DEGs were identified, including 16 up-regulated and 6 down-regulated. Among them, expressions of CBS, COCS1, EGFR, as hub genes, were significantly associated with the prognosis of OS patients and were evidenced as independent prognostic factors. An efficient prognostic model covering hub gene expressions and clinical variables was developed and validated. Combining the results of hub genes in differential analysis, the actions of hub genes in ferroptosis, and the prognostic relevance of hub genes in patients, we revealed that CBS, SOCS1 and EGFR might play essential roles in OS and its chemoresistance with potential research and clinical value. Nature Publishing Group UK 2022-03-23 /pmc/articles/PMC8943205/ /pubmed/35322804 http://dx.doi.org/10.1038/s41598-022-09080-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Zhao, Jiazheng Zhao, Yi Ma, Xiaowei Feng, Helin Jia, Litao Outstanding prognostic value of novel ferroptosis-related genes in chemoresistance osteosarcoma patients |
title | Outstanding prognostic value of novel ferroptosis-related genes in chemoresistance osteosarcoma patients |
title_full | Outstanding prognostic value of novel ferroptosis-related genes in chemoresistance osteosarcoma patients |
title_fullStr | Outstanding prognostic value of novel ferroptosis-related genes in chemoresistance osteosarcoma patients |
title_full_unstemmed | Outstanding prognostic value of novel ferroptosis-related genes in chemoresistance osteosarcoma patients |
title_short | Outstanding prognostic value of novel ferroptosis-related genes in chemoresistance osteosarcoma patients |
title_sort | outstanding prognostic value of novel ferroptosis-related genes in chemoresistance osteosarcoma patients |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8943205/ https://www.ncbi.nlm.nih.gov/pubmed/35322804 http://dx.doi.org/10.1038/s41598-022-09080-5 |
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