Cargando…

The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes

Human sleep phenotypes can be defined and diversified by both genetic and environmental factors. However, some sleep phenotypes are difficult to evaluate without long-term, precise sleep monitoring, for which simple yet accurate sleep measurement is required. To solve this problem, we recently devel...

Descripción completa

Detalles Bibliográficos
Autores principales: Katori, Machiko, Shi, Shoi, Ode, Koji L., Tomita, Yasuhiro, Ueda, Hiroki R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8944865/
https://www.ncbi.nlm.nih.gov/pubmed/35302893
http://dx.doi.org/10.1073/pnas.2116729119
_version_ 1784673822987780096
author Katori, Machiko
Shi, Shoi
Ode, Koji L.
Tomita, Yasuhiro
Ueda, Hiroki R.
author_facet Katori, Machiko
Shi, Shoi
Ode, Koji L.
Tomita, Yasuhiro
Ueda, Hiroki R.
author_sort Katori, Machiko
collection PubMed
description Human sleep phenotypes can be defined and diversified by both genetic and environmental factors. However, some sleep phenotypes are difficult to evaluate without long-term, precise sleep monitoring, for which simple yet accurate sleep measurement is required. To solve this problem, we recently developed a state-of-the-art sleep/wake classification algorithm based on wristband-type accelerometers, termed ACCEL (acceleration-based classification and estimation of long-term sleep-wake cycles). In this study, we optimized and applied ACCEL to large-scale analysis of human sleep phenotypes. The clustering of an about 100,000-arm acceleration dataset in the UK Biobank using uniform manifold approximation and projection (UMAP) dimension reduction and density-based spatial clustering of applications with noise (DBSCAN) clustering methods identified 16 sleep phenotypes, including those related to social jet lag, chronotypes (“morning/night person”), and seven different insomnia-like phenotypes. Considering the complex relationship between sleep disorders and other psychiatric disorders, these unbiased and comprehensive analyses of sleep phenotypes in humans will not only contribute to the advancement of biomedical research on genetic and environmental factors underlying human sleep patterns but also, allow for the development of better digital biomarkers for psychiatric disorders.
format Online
Article
Text
id pubmed-8944865
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher National Academy of Sciences
record_format MEDLINE/PubMed
spelling pubmed-89448652022-03-25 The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes Katori, Machiko Shi, Shoi Ode, Koji L. Tomita, Yasuhiro Ueda, Hiroki R. Proc Natl Acad Sci U S A Biological Sciences Human sleep phenotypes can be defined and diversified by both genetic and environmental factors. However, some sleep phenotypes are difficult to evaluate without long-term, precise sleep monitoring, for which simple yet accurate sleep measurement is required. To solve this problem, we recently developed a state-of-the-art sleep/wake classification algorithm based on wristband-type accelerometers, termed ACCEL (acceleration-based classification and estimation of long-term sleep-wake cycles). In this study, we optimized and applied ACCEL to large-scale analysis of human sleep phenotypes. The clustering of an about 100,000-arm acceleration dataset in the UK Biobank using uniform manifold approximation and projection (UMAP) dimension reduction and density-based spatial clustering of applications with noise (DBSCAN) clustering methods identified 16 sleep phenotypes, including those related to social jet lag, chronotypes (“morning/night person”), and seven different insomnia-like phenotypes. Considering the complex relationship between sleep disorders and other psychiatric disorders, these unbiased and comprehensive analyses of sleep phenotypes in humans will not only contribute to the advancement of biomedical research on genetic and environmental factors underlying human sleep patterns but also, allow for the development of better digital biomarkers for psychiatric disorders. National Academy of Sciences 2022-03-18 2022-03-22 /pmc/articles/PMC8944865/ /pubmed/35302893 http://dx.doi.org/10.1073/pnas.2116729119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Biological Sciences
Katori, Machiko
Shi, Shoi
Ode, Koji L.
Tomita, Yasuhiro
Ueda, Hiroki R.
The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes
title The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes
title_full The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes
title_fullStr The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes
title_full_unstemmed The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes
title_short The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes
title_sort 103,200-arm acceleration dataset in the uk biobank revealed a landscape of human sleep phenotypes
topic Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8944865/
https://www.ncbi.nlm.nih.gov/pubmed/35302893
http://dx.doi.org/10.1073/pnas.2116729119
work_keys_str_mv AT katorimachiko the103200armaccelerationdatasetintheukbiobankrevealedalandscapeofhumansleepphenotypes
AT shishoi the103200armaccelerationdatasetintheukbiobankrevealedalandscapeofhumansleepphenotypes
AT odekojil the103200armaccelerationdatasetintheukbiobankrevealedalandscapeofhumansleepphenotypes
AT tomitayasuhiro the103200armaccelerationdatasetintheukbiobankrevealedalandscapeofhumansleepphenotypes
AT uedahirokir the103200armaccelerationdatasetintheukbiobankrevealedalandscapeofhumansleepphenotypes
AT katorimachiko 103200armaccelerationdatasetintheukbiobankrevealedalandscapeofhumansleepphenotypes
AT shishoi 103200armaccelerationdatasetintheukbiobankrevealedalandscapeofhumansleepphenotypes
AT odekojil 103200armaccelerationdatasetintheukbiobankrevealedalandscapeofhumansleepphenotypes
AT tomitayasuhiro 103200armaccelerationdatasetintheukbiobankrevealedalandscapeofhumansleepphenotypes
AT uedahirokir 103200armaccelerationdatasetintheukbiobankrevealedalandscapeofhumansleepphenotypes