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Suppressing Nonspecific Binding in Biolayer Interferometry Experiments for Weak Ligand–Analyte Interactions

[Image: see text] Quantitative analysis of protein–protein interactions (PPIs) using biolayer interferometry (BLI) requires effective suppression of nonspecific binding (NSB) between analytes and biosensors. In particular, the study of weak interactions (i.e., K(D) > 1 μM) requires high concentra...

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Autores principales: Dubrow, Alyssa, Zuniga, Bryan, Topo, Elias, Cho, Jae-Hyun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8945191/
https://www.ncbi.nlm.nih.gov/pubmed/35350330
http://dx.doi.org/10.1021/acsomega.1c05659
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author Dubrow, Alyssa
Zuniga, Bryan
Topo, Elias
Cho, Jae-Hyun
author_facet Dubrow, Alyssa
Zuniga, Bryan
Topo, Elias
Cho, Jae-Hyun
author_sort Dubrow, Alyssa
collection PubMed
description [Image: see text] Quantitative analysis of protein–protein interactions (PPIs) using biolayer interferometry (BLI) requires effective suppression of nonspecific binding (NSB) between analytes and biosensors. In particular, the study of weak interactions (i.e., K(D) > 1 μM) requires high concentrations of analytes, which substantially increases NSB. However, there are only a few so-called NSB blockers compatible with biomolecules, which limits the use of BLI in the accurate analysis of weak interactions. The present study aims to identify a new NSB blocker for the quantitative analysis of weak PPIs using BLI. We find that saccharides, especially sucrose, are potent NSB blockers and demonstrate their compatibility with other blocking additives. We also demonstrate the effects of the new NSB blocker by characterizing the binding between nonstructural protein 1 of the influenza A virus and human phosphoinositide 3-kinase. We anticipate that the new NSB-blocking admixture will find broad applications in studying weak interactions using BLI.
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spelling pubmed-89451912022-03-28 Suppressing Nonspecific Binding in Biolayer Interferometry Experiments for Weak Ligand–Analyte Interactions Dubrow, Alyssa Zuniga, Bryan Topo, Elias Cho, Jae-Hyun ACS Omega [Image: see text] Quantitative analysis of protein–protein interactions (PPIs) using biolayer interferometry (BLI) requires effective suppression of nonspecific binding (NSB) between analytes and biosensors. In particular, the study of weak interactions (i.e., K(D) > 1 μM) requires high concentrations of analytes, which substantially increases NSB. However, there are only a few so-called NSB blockers compatible with biomolecules, which limits the use of BLI in the accurate analysis of weak interactions. The present study aims to identify a new NSB blocker for the quantitative analysis of weak PPIs using BLI. We find that saccharides, especially sucrose, are potent NSB blockers and demonstrate their compatibility with other blocking additives. We also demonstrate the effects of the new NSB blocker by characterizing the binding between nonstructural protein 1 of the influenza A virus and human phosphoinositide 3-kinase. We anticipate that the new NSB-blocking admixture will find broad applications in studying weak interactions using BLI. American Chemical Society 2022-03-09 /pmc/articles/PMC8945191/ /pubmed/35350330 http://dx.doi.org/10.1021/acsomega.1c05659 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Dubrow, Alyssa
Zuniga, Bryan
Topo, Elias
Cho, Jae-Hyun
Suppressing Nonspecific Binding in Biolayer Interferometry Experiments for Weak Ligand–Analyte Interactions
title Suppressing Nonspecific Binding in Biolayer Interferometry Experiments for Weak Ligand–Analyte Interactions
title_full Suppressing Nonspecific Binding in Biolayer Interferometry Experiments for Weak Ligand–Analyte Interactions
title_fullStr Suppressing Nonspecific Binding in Biolayer Interferometry Experiments for Weak Ligand–Analyte Interactions
title_full_unstemmed Suppressing Nonspecific Binding in Biolayer Interferometry Experiments for Weak Ligand–Analyte Interactions
title_short Suppressing Nonspecific Binding in Biolayer Interferometry Experiments for Weak Ligand–Analyte Interactions
title_sort suppressing nonspecific binding in biolayer interferometry experiments for weak ligand–analyte interactions
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8945191/
https://www.ncbi.nlm.nih.gov/pubmed/35350330
http://dx.doi.org/10.1021/acsomega.1c05659
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