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The Role of 3D CT Imaging in the Accurate Diagnosis of Lung Function in Coronavirus Patients

Early grading of coronavirus disease 2019 (COVID-19), as well as ventilator support machines, are prime ways to help the world fight this virus and reduce the mortality rate. To reduce the burden on physicians, we developed an automatic Computer-Aided Diagnostic (CAD) system to grade COVID-19 from C...

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Autores principales: Farahat, Ibrahim Shawky, Sharafeldeen, Ahmed, Elsharkawy, Mohamed, Soliman, Ahmed, Mahmoud, Ali, Ghazal, Mohammed, Taher, Fatma, Bilal, Maha, Abdel Razek, Ahmed Abdel Khalek, Aladrousy, Waleed, Elmougy, Samir, Tolba, Ahmed Elsaid, El-Melegy, Moumen, El-Baz, Ayman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8947065/
https://www.ncbi.nlm.nih.gov/pubmed/35328249
http://dx.doi.org/10.3390/diagnostics12030696
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author Farahat, Ibrahim Shawky
Sharafeldeen, Ahmed
Elsharkawy, Mohamed
Soliman, Ahmed
Mahmoud, Ali
Ghazal, Mohammed
Taher, Fatma
Bilal, Maha
Abdel Razek, Ahmed Abdel Khalek
Aladrousy, Waleed
Elmougy, Samir
Tolba, Ahmed Elsaid
El-Melegy, Moumen
El-Baz, Ayman
author_facet Farahat, Ibrahim Shawky
Sharafeldeen, Ahmed
Elsharkawy, Mohamed
Soliman, Ahmed
Mahmoud, Ali
Ghazal, Mohammed
Taher, Fatma
Bilal, Maha
Abdel Razek, Ahmed Abdel Khalek
Aladrousy, Waleed
Elmougy, Samir
Tolba, Ahmed Elsaid
El-Melegy, Moumen
El-Baz, Ayman
author_sort Farahat, Ibrahim Shawky
collection PubMed
description Early grading of coronavirus disease 2019 (COVID-19), as well as ventilator support machines, are prime ways to help the world fight this virus and reduce the mortality rate. To reduce the burden on physicians, we developed an automatic Computer-Aided Diagnostic (CAD) system to grade COVID-19 from Computed Tomography (CT) images. This system segments the lung region from chest CT scans using an unsupervised approach based on an appearance model, followed by 3D rotation invariant Markov–Gibbs Random Field (MGRF)-based morphological constraints. This system analyzes the segmented lung and generates precise, analytical imaging markers by estimating the MGRF-based analytical potentials. Three Gibbs energy markers were extracted from each CT scan by tuning the MGRF parameters on each lesion separately. The latter were healthy/mild, moderate, and severe lesions. To represent these markers more reliably, a Cumulative Distribution Function (CDF) was generated, then statistical markers were extracted from it, namely, 10th through 90th CDF percentiles with 10% increments. Subsequently, the three extracted markers were combined together and fed into a backpropagation neural network to make the diagnosis. The developed system was assessed on 76 COVID-19-infected patients using two metrics, namely, accuracy and Kappa. In this paper, the proposed system was trained and tested by three approaches. In the first approach, the MGRF model was trained and tested on the lungs. This approach achieved [Formula: see text] % accuracy and [Formula: see text] % kappa. In the second approach, we trained the MGRF model on the lesions and tested it on the lungs. This approach achieved [Formula: see text] % accuracy and [Formula: see text] % kappa. Finally, we trained and tested the MGRF model on lesions. It achieved 100% accuracy and 100% kappa. The results reported in this paper show the ability of the developed system to accurately grade COVID-19 lesions compared to other machine learning classifiers, such as k-Nearest Neighbor (KNN), decision tree, naïve Bayes, and random forest.
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spelling pubmed-89470652022-03-25 The Role of 3D CT Imaging in the Accurate Diagnosis of Lung Function in Coronavirus Patients Farahat, Ibrahim Shawky Sharafeldeen, Ahmed Elsharkawy, Mohamed Soliman, Ahmed Mahmoud, Ali Ghazal, Mohammed Taher, Fatma Bilal, Maha Abdel Razek, Ahmed Abdel Khalek Aladrousy, Waleed Elmougy, Samir Tolba, Ahmed Elsaid El-Melegy, Moumen El-Baz, Ayman Diagnostics (Basel) Article Early grading of coronavirus disease 2019 (COVID-19), as well as ventilator support machines, are prime ways to help the world fight this virus and reduce the mortality rate. To reduce the burden on physicians, we developed an automatic Computer-Aided Diagnostic (CAD) system to grade COVID-19 from Computed Tomography (CT) images. This system segments the lung region from chest CT scans using an unsupervised approach based on an appearance model, followed by 3D rotation invariant Markov–Gibbs Random Field (MGRF)-based morphological constraints. This system analyzes the segmented lung and generates precise, analytical imaging markers by estimating the MGRF-based analytical potentials. Three Gibbs energy markers were extracted from each CT scan by tuning the MGRF parameters on each lesion separately. The latter were healthy/mild, moderate, and severe lesions. To represent these markers more reliably, a Cumulative Distribution Function (CDF) was generated, then statistical markers were extracted from it, namely, 10th through 90th CDF percentiles with 10% increments. Subsequently, the three extracted markers were combined together and fed into a backpropagation neural network to make the diagnosis. The developed system was assessed on 76 COVID-19-infected patients using two metrics, namely, accuracy and Kappa. In this paper, the proposed system was trained and tested by three approaches. In the first approach, the MGRF model was trained and tested on the lungs. This approach achieved [Formula: see text] % accuracy and [Formula: see text] % kappa. In the second approach, we trained the MGRF model on the lesions and tested it on the lungs. This approach achieved [Formula: see text] % accuracy and [Formula: see text] % kappa. Finally, we trained and tested the MGRF model on lesions. It achieved 100% accuracy and 100% kappa. The results reported in this paper show the ability of the developed system to accurately grade COVID-19 lesions compared to other machine learning classifiers, such as k-Nearest Neighbor (KNN), decision tree, naïve Bayes, and random forest. MDPI 2022-03-12 /pmc/articles/PMC8947065/ /pubmed/35328249 http://dx.doi.org/10.3390/diagnostics12030696 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Farahat, Ibrahim Shawky
Sharafeldeen, Ahmed
Elsharkawy, Mohamed
Soliman, Ahmed
Mahmoud, Ali
Ghazal, Mohammed
Taher, Fatma
Bilal, Maha
Abdel Razek, Ahmed Abdel Khalek
Aladrousy, Waleed
Elmougy, Samir
Tolba, Ahmed Elsaid
El-Melegy, Moumen
El-Baz, Ayman
The Role of 3D CT Imaging in the Accurate Diagnosis of Lung Function in Coronavirus Patients
title The Role of 3D CT Imaging in the Accurate Diagnosis of Lung Function in Coronavirus Patients
title_full The Role of 3D CT Imaging in the Accurate Diagnosis of Lung Function in Coronavirus Patients
title_fullStr The Role of 3D CT Imaging in the Accurate Diagnosis of Lung Function in Coronavirus Patients
title_full_unstemmed The Role of 3D CT Imaging in the Accurate Diagnosis of Lung Function in Coronavirus Patients
title_short The Role of 3D CT Imaging in the Accurate Diagnosis of Lung Function in Coronavirus Patients
title_sort role of 3d ct imaging in the accurate diagnosis of lung function in coronavirus patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8947065/
https://www.ncbi.nlm.nih.gov/pubmed/35328249
http://dx.doi.org/10.3390/diagnostics12030696
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