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An Entropy Approach to Multiple Sclerosis Identification

Multiple sclerosis (MS) is a relatively common neurodegenerative illness that frequently causes a large level of disability in patients. While its cause is not fully understood, it is likely due to a combination of genetic and environmental factors. Diagnosis of multiple sclerosis through a simple c...

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Autores principales: Perez, Gerardo Alfonso, Villarraso, Javier Caballero
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8948909/
https://www.ncbi.nlm.nih.gov/pubmed/35330398
http://dx.doi.org/10.3390/jpm12030398
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author Perez, Gerardo Alfonso
Villarraso, Javier Caballero
author_facet Perez, Gerardo Alfonso
Villarraso, Javier Caballero
author_sort Perez, Gerardo Alfonso
collection PubMed
description Multiple sclerosis (MS) is a relatively common neurodegenerative illness that frequently causes a large level of disability in patients. While its cause is not fully understood, it is likely due to a combination of genetic and environmental factors. Diagnosis of multiple sclerosis through a simple clinical examination might be challenging as the evolution of the illness varies significantly from patient to patient, with some patients experiencing long periods of remission. In this regard, having a quick and inexpensive tool to help identify the illness, such as DNA CpG (cytosine-phosphate-guanine) methylation, might be useful. In this paper, a technique is presented, based on the concept of Shannon Entropy, to select CpGs as inputs for non-linear classification algorithms. It will be shown that this approach generates accurate classifications that are a statistically significant improvement over using all the data available or randomly selecting the same number of CpGs. The analysis controlled for factors such as age, gender and smoking status of the patient. This approach managed to reduce the number of CpGs used while at the same time significantly increasing the accuracy.
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spelling pubmed-89489092022-03-26 An Entropy Approach to Multiple Sclerosis Identification Perez, Gerardo Alfonso Villarraso, Javier Caballero J Pers Med Article Multiple sclerosis (MS) is a relatively common neurodegenerative illness that frequently causes a large level of disability in patients. While its cause is not fully understood, it is likely due to a combination of genetic and environmental factors. Diagnosis of multiple sclerosis through a simple clinical examination might be challenging as the evolution of the illness varies significantly from patient to patient, with some patients experiencing long periods of remission. In this regard, having a quick and inexpensive tool to help identify the illness, such as DNA CpG (cytosine-phosphate-guanine) methylation, might be useful. In this paper, a technique is presented, based on the concept of Shannon Entropy, to select CpGs as inputs for non-linear classification algorithms. It will be shown that this approach generates accurate classifications that are a statistically significant improvement over using all the data available or randomly selecting the same number of CpGs. The analysis controlled for factors such as age, gender and smoking status of the patient. This approach managed to reduce the number of CpGs used while at the same time significantly increasing the accuracy. MDPI 2022-03-04 /pmc/articles/PMC8948909/ /pubmed/35330398 http://dx.doi.org/10.3390/jpm12030398 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Perez, Gerardo Alfonso
Villarraso, Javier Caballero
An Entropy Approach to Multiple Sclerosis Identification
title An Entropy Approach to Multiple Sclerosis Identification
title_full An Entropy Approach to Multiple Sclerosis Identification
title_fullStr An Entropy Approach to Multiple Sclerosis Identification
title_full_unstemmed An Entropy Approach to Multiple Sclerosis Identification
title_short An Entropy Approach to Multiple Sclerosis Identification
title_sort entropy approach to multiple sclerosis identification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8948909/
https://www.ncbi.nlm.nih.gov/pubmed/35330398
http://dx.doi.org/10.3390/jpm12030398
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