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Identification of Immune Markers in Dilated Cardiomyopathies with Heart Failure by Integrated Weighted Gene Coexpression Network Analysis

Dilated cardiomyopathy (DCM), a heterogeneous cardiomyopathy, is a major cause of heart failure and heart transplant. Currently, immunotherapy is believed to be an effective treatment method for DCM. However, individual differences are so obvious that the clinical effect is not satisfactory. In orde...

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Autores principales: Wang, Xuehua, Guan, Hongquan, Liu, Wei, Li, Huili, Ding, Jiaxing, Feng, Yu, Chen, Zhijian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8950518/
https://www.ncbi.nlm.nih.gov/pubmed/35327947
http://dx.doi.org/10.3390/genes13030393
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author Wang, Xuehua
Guan, Hongquan
Liu, Wei
Li, Huili
Ding, Jiaxing
Feng, Yu
Chen, Zhijian
author_facet Wang, Xuehua
Guan, Hongquan
Liu, Wei
Li, Huili
Ding, Jiaxing
Feng, Yu
Chen, Zhijian
author_sort Wang, Xuehua
collection PubMed
description Dilated cardiomyopathy (DCM), a heterogeneous cardiomyopathy, is a major cause of heart failure and heart transplant. Currently, immunotherapy is believed to be an effective treatment method for DCM. However, individual differences are so obvious that the clinical effect is not satisfactory. In order to find immune-related biomarkers of DCM to guide treatment and improve clinical efficacy, we downloaded a GSE120895 dataset from the Gene Expression Omnibus (GEO) database using CIBERSORT and WGCNA algorithms in RStudio and visualizing the protein–protein interaction (PPI) network for key modules by Cytoscape, and finally obtained six hub genes. A GSE17800 dataset was downloaded from the GEO dataset to verify the diagnostic values of hub genes, MYG1, FLOT1, and ATG13, which were excellent. Our study revealed unpublished potential immune mechanisms, biomarkers, and therapeutic targets of DCM.
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spelling pubmed-89505182022-03-26 Identification of Immune Markers in Dilated Cardiomyopathies with Heart Failure by Integrated Weighted Gene Coexpression Network Analysis Wang, Xuehua Guan, Hongquan Liu, Wei Li, Huili Ding, Jiaxing Feng, Yu Chen, Zhijian Genes (Basel) Article Dilated cardiomyopathy (DCM), a heterogeneous cardiomyopathy, is a major cause of heart failure and heart transplant. Currently, immunotherapy is believed to be an effective treatment method for DCM. However, individual differences are so obvious that the clinical effect is not satisfactory. In order to find immune-related biomarkers of DCM to guide treatment and improve clinical efficacy, we downloaded a GSE120895 dataset from the Gene Expression Omnibus (GEO) database using CIBERSORT and WGCNA algorithms in RStudio and visualizing the protein–protein interaction (PPI) network for key modules by Cytoscape, and finally obtained six hub genes. A GSE17800 dataset was downloaded from the GEO dataset to verify the diagnostic values of hub genes, MYG1, FLOT1, and ATG13, which were excellent. Our study revealed unpublished potential immune mechanisms, biomarkers, and therapeutic targets of DCM. MDPI 2022-02-22 /pmc/articles/PMC8950518/ /pubmed/35327947 http://dx.doi.org/10.3390/genes13030393 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Xuehua
Guan, Hongquan
Liu, Wei
Li, Huili
Ding, Jiaxing
Feng, Yu
Chen, Zhijian
Identification of Immune Markers in Dilated Cardiomyopathies with Heart Failure by Integrated Weighted Gene Coexpression Network Analysis
title Identification of Immune Markers in Dilated Cardiomyopathies with Heart Failure by Integrated Weighted Gene Coexpression Network Analysis
title_full Identification of Immune Markers in Dilated Cardiomyopathies with Heart Failure by Integrated Weighted Gene Coexpression Network Analysis
title_fullStr Identification of Immune Markers in Dilated Cardiomyopathies with Heart Failure by Integrated Weighted Gene Coexpression Network Analysis
title_full_unstemmed Identification of Immune Markers in Dilated Cardiomyopathies with Heart Failure by Integrated Weighted Gene Coexpression Network Analysis
title_short Identification of Immune Markers in Dilated Cardiomyopathies with Heart Failure by Integrated Weighted Gene Coexpression Network Analysis
title_sort identification of immune markers in dilated cardiomyopathies with heart failure by integrated weighted gene coexpression network analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8950518/
https://www.ncbi.nlm.nih.gov/pubmed/35327947
http://dx.doi.org/10.3390/genes13030393
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