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Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses

Phylogenetic reconciliation is a fundamental method in the study of pairs of coevolving species. This paper provides an overview of the underlying theory of reconciliation in the context of host-symbiont cophylogenetics, identifying some of the major challenges to users of these methods, such as sel...

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Detalles Bibliográficos
Autor principal: Libeskind-Hadas, Ran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8951107/
https://www.ncbi.nlm.nih.gov/pubmed/35330194
http://dx.doi.org/10.3390/life12030443
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author Libeskind-Hadas, Ran
author_facet Libeskind-Hadas, Ran
author_sort Libeskind-Hadas, Ran
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description Phylogenetic reconciliation is a fundamental method in the study of pairs of coevolving species. This paper provides an overview of the underlying theory of reconciliation in the context of host-symbiont cophylogenetics, identifying some of the major challenges to users of these methods, such as selecting event costs and selecting representative reconciliations. Next, recent advances to address these challenges are discussed followed by a discussion of several established and recent software tools.
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spelling pubmed-89511072022-03-26 Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses Libeskind-Hadas, Ran Life (Basel) Article Phylogenetic reconciliation is a fundamental method in the study of pairs of coevolving species. This paper provides an overview of the underlying theory of reconciliation in the context of host-symbiont cophylogenetics, identifying some of the major challenges to users of these methods, such as selecting event costs and selecting representative reconciliations. Next, recent advances to address these challenges are discussed followed by a discussion of several established and recent software tools. MDPI 2022-03-17 /pmc/articles/PMC8951107/ /pubmed/35330194 http://dx.doi.org/10.3390/life12030443 Text en © 2022 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Libeskind-Hadas, Ran
Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses
title Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses
title_full Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses
title_fullStr Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses
title_full_unstemmed Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses
title_short Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses
title_sort tree reconciliation methods for host-symbiont cophylogenetic analyses
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8951107/
https://www.ncbi.nlm.nih.gov/pubmed/35330194
http://dx.doi.org/10.3390/life12030443
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