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Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses
Phylogenetic reconciliation is a fundamental method in the study of pairs of coevolving species. This paper provides an overview of the underlying theory of reconciliation in the context of host-symbiont cophylogenetics, identifying some of the major challenges to users of these methods, such as sel...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8951107/ https://www.ncbi.nlm.nih.gov/pubmed/35330194 http://dx.doi.org/10.3390/life12030443 |
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author | Libeskind-Hadas, Ran |
author_facet | Libeskind-Hadas, Ran |
author_sort | Libeskind-Hadas, Ran |
collection | PubMed |
description | Phylogenetic reconciliation is a fundamental method in the study of pairs of coevolving species. This paper provides an overview of the underlying theory of reconciliation in the context of host-symbiont cophylogenetics, identifying some of the major challenges to users of these methods, such as selecting event costs and selecting representative reconciliations. Next, recent advances to address these challenges are discussed followed by a discussion of several established and recent software tools. |
format | Online Article Text |
id | pubmed-8951107 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-89511072022-03-26 Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses Libeskind-Hadas, Ran Life (Basel) Article Phylogenetic reconciliation is a fundamental method in the study of pairs of coevolving species. This paper provides an overview of the underlying theory of reconciliation in the context of host-symbiont cophylogenetics, identifying some of the major challenges to users of these methods, such as selecting event costs and selecting representative reconciliations. Next, recent advances to address these challenges are discussed followed by a discussion of several established and recent software tools. MDPI 2022-03-17 /pmc/articles/PMC8951107/ /pubmed/35330194 http://dx.doi.org/10.3390/life12030443 Text en © 2022 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Libeskind-Hadas, Ran Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses |
title | Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses |
title_full | Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses |
title_fullStr | Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses |
title_full_unstemmed | Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses |
title_short | Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses |
title_sort | tree reconciliation methods for host-symbiont cophylogenetic analyses |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8951107/ https://www.ncbi.nlm.nih.gov/pubmed/35330194 http://dx.doi.org/10.3390/life12030443 |
work_keys_str_mv | AT libeskindhadasran treereconciliationmethodsforhostsymbiontcophylogeneticanalyses |