Cargando…

Behavioural Classification of Cattle Using Neck-Mounted Accelerometer-Equipped Collars

Monitoring and classification of dairy cattle behaviours is essential for optimising milk yields. Early detection of illness, days before the critical conditions occur, together with automatic detection of the onset of oestrus cycles is crucial for obviating prolonged cattle treatments and improving...

Descripción completa

Detalles Bibliográficos
Autores principales: Pavlovic, Dejan, Czerkawski, Mikolaj, Davison, Christopher, Marko, Oskar, Michie, Craig, Atkinson, Robert, Crnojevic, Vladimir, Andonovic, Ivan, Rajovic, Vladimir, Kvascev, Goran, Tachtatzis, Christos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8951529/
https://www.ncbi.nlm.nih.gov/pubmed/35336494
http://dx.doi.org/10.3390/s22062323
_version_ 1784675410065227776
author Pavlovic, Dejan
Czerkawski, Mikolaj
Davison, Christopher
Marko, Oskar
Michie, Craig
Atkinson, Robert
Crnojevic, Vladimir
Andonovic, Ivan
Rajovic, Vladimir
Kvascev, Goran
Tachtatzis, Christos
author_facet Pavlovic, Dejan
Czerkawski, Mikolaj
Davison, Christopher
Marko, Oskar
Michie, Craig
Atkinson, Robert
Crnojevic, Vladimir
Andonovic, Ivan
Rajovic, Vladimir
Kvascev, Goran
Tachtatzis, Christos
author_sort Pavlovic, Dejan
collection PubMed
description Monitoring and classification of dairy cattle behaviours is essential for optimising milk yields. Early detection of illness, days before the critical conditions occur, together with automatic detection of the onset of oestrus cycles is crucial for obviating prolonged cattle treatments and improving the pregnancy rates. Accelerometer-based sensor systems are becoming increasingly popular, as they are automatically providing information about key cattle behaviours such as the level of restlessness and the time spent ruminating and eating, proxy measurements that indicate the onset of heat events and overall welfare, at an individual animal level. This paper reports on an approach to the development of algorithms that classify key cattle states based on a systematic dimensionality reduction process through two feature selection techniques. These are based on Mutual Information and Backward Feature Elimination and applied on knowledge-specific and generic time-series extracted from raw accelerometer data. The extracted features are then used to train classification models based on a Hidden Markov Model, Linear Discriminant Analysis and Partial Least Squares Discriminant Analysis. The proposed feature engineering methodology permits model deployment within the computing and memory restrictions imposed by operational settings. The models were based on measurement data from 18 steers, each animal equipped with an accelerometer-based neck-mounted collar and muzzle-mounted halter, the latter providing the truthing data. A total of 42 time-series features were initially extracted and the trade-off between model performance, computational complexity and memory footprint was explored. Results show that the classification model that best balances performance and computation complexity is based on Linear Discriminant Analysis using features selected through Backward Feature Elimination. The final model requires 1.83 ± 1.00 ms to perform feature extraction with 0.05 ± 0.01 ms for inference with an overall balanced accuracy of 0.83.
format Online
Article
Text
id pubmed-8951529
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-89515292022-03-26 Behavioural Classification of Cattle Using Neck-Mounted Accelerometer-Equipped Collars Pavlovic, Dejan Czerkawski, Mikolaj Davison, Christopher Marko, Oskar Michie, Craig Atkinson, Robert Crnojevic, Vladimir Andonovic, Ivan Rajovic, Vladimir Kvascev, Goran Tachtatzis, Christos Sensors (Basel) Article Monitoring and classification of dairy cattle behaviours is essential for optimising milk yields. Early detection of illness, days before the critical conditions occur, together with automatic detection of the onset of oestrus cycles is crucial for obviating prolonged cattle treatments and improving the pregnancy rates. Accelerometer-based sensor systems are becoming increasingly popular, as they are automatically providing information about key cattle behaviours such as the level of restlessness and the time spent ruminating and eating, proxy measurements that indicate the onset of heat events and overall welfare, at an individual animal level. This paper reports on an approach to the development of algorithms that classify key cattle states based on a systematic dimensionality reduction process through two feature selection techniques. These are based on Mutual Information and Backward Feature Elimination and applied on knowledge-specific and generic time-series extracted from raw accelerometer data. The extracted features are then used to train classification models based on a Hidden Markov Model, Linear Discriminant Analysis and Partial Least Squares Discriminant Analysis. The proposed feature engineering methodology permits model deployment within the computing and memory restrictions imposed by operational settings. The models were based on measurement data from 18 steers, each animal equipped with an accelerometer-based neck-mounted collar and muzzle-mounted halter, the latter providing the truthing data. A total of 42 time-series features were initially extracted and the trade-off between model performance, computational complexity and memory footprint was explored. Results show that the classification model that best balances performance and computation complexity is based on Linear Discriminant Analysis using features selected through Backward Feature Elimination. The final model requires 1.83 ± 1.00 ms to perform feature extraction with 0.05 ± 0.01 ms for inference with an overall balanced accuracy of 0.83. MDPI 2022-03-17 /pmc/articles/PMC8951529/ /pubmed/35336494 http://dx.doi.org/10.3390/s22062323 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Pavlovic, Dejan
Czerkawski, Mikolaj
Davison, Christopher
Marko, Oskar
Michie, Craig
Atkinson, Robert
Crnojevic, Vladimir
Andonovic, Ivan
Rajovic, Vladimir
Kvascev, Goran
Tachtatzis, Christos
Behavioural Classification of Cattle Using Neck-Mounted Accelerometer-Equipped Collars
title Behavioural Classification of Cattle Using Neck-Mounted Accelerometer-Equipped Collars
title_full Behavioural Classification of Cattle Using Neck-Mounted Accelerometer-Equipped Collars
title_fullStr Behavioural Classification of Cattle Using Neck-Mounted Accelerometer-Equipped Collars
title_full_unstemmed Behavioural Classification of Cattle Using Neck-Mounted Accelerometer-Equipped Collars
title_short Behavioural Classification of Cattle Using Neck-Mounted Accelerometer-Equipped Collars
title_sort behavioural classification of cattle using neck-mounted accelerometer-equipped collars
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8951529/
https://www.ncbi.nlm.nih.gov/pubmed/35336494
http://dx.doi.org/10.3390/s22062323
work_keys_str_mv AT pavlovicdejan behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars
AT czerkawskimikolaj behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars
AT davisonchristopher behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars
AT markooskar behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars
AT michiecraig behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars
AT atkinsonrobert behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars
AT crnojevicvladimir behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars
AT andonovicivan behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars
AT rajovicvladimir behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars
AT kvascevgoran behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars
AT tachtatzischristos behaviouralclassificationofcattleusingneckmountedaccelerometerequippedcollars