Cargando…

A Cutoff Determination of Real-Time Loop-Mediated Isothermal Amplification (LAMP) for End-Point Detection of Campylobacter jejuni in Chicken Meat

Campylobacter jejuni is one of the leading causes of foodborne illness worldwide. C. jejuni is commonly found in poultry. It is the most frequent cause of contamination and thus resulting in not only public health concerns but also economic impacts. To test for this bacterial contamination in food p...

Descripción completa

Detalles Bibliográficos
Autores principales: Jainonthee, Chalita, Chaisowwong, Warangkhana, Ngamsanga, Phakamas, Wiratsudakul, Anuwat, Meeyam, Tongkorn, Pichpol, Duangporn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8953776/
https://www.ncbi.nlm.nih.gov/pubmed/35324850
http://dx.doi.org/10.3390/vetsci9030122
_version_ 1784675933156802560
author Jainonthee, Chalita
Chaisowwong, Warangkhana
Ngamsanga, Phakamas
Wiratsudakul, Anuwat
Meeyam, Tongkorn
Pichpol, Duangporn
author_facet Jainonthee, Chalita
Chaisowwong, Warangkhana
Ngamsanga, Phakamas
Wiratsudakul, Anuwat
Meeyam, Tongkorn
Pichpol, Duangporn
author_sort Jainonthee, Chalita
collection PubMed
description Campylobacter jejuni is one of the leading causes of foodborne illness worldwide. C. jejuni is commonly found in poultry. It is the most frequent cause of contamination and thus resulting in not only public health concerns but also economic impacts. To test for this bacterial contamination in food processing plants, this study attempted to employ a simple and rapid detection assay called loop-mediated isothermal amplification (LAMP). The best cutoff value for the positive determination of C. jejuni calculated using real-time LAMP quantification cycle (C(q)) was derived from the receiver operating characteristic (ROC) curve modeling. The model showed an area under curve (AUC) of 0.936 (95% Wald CI: 0.903–0.970). Based on Youden’s J statistic, the optimal cutoff value which had the highest sensitivity and specificity from the model was calculated as 18.07. The LAMP assay had 96.9% sensitivity, 95.8% specificity, and 93.9 and 97.9% positive and negative predictive values, respectively, compared to a standard culture approach for C. jejuni identification. Among all non-C. jejuni strains, the LAMP assay gave each of 12.5% false-positive results to C. coli and E. coli (1 out of 8 samples). The assay can detect C. jejuni at the lowest concentration of 10(3) CFU/mL. Our results suggest a preliminary indicator for the application of end-point LAMP assays, such as turbidity and UV fluorescence tests, to detect C. jejuni in field operations. The LAMP assay is an alternative screening test for C. jejuni contamination in food samples. The method provides a rapid detection, which requires only 9 min with a cutoff value of C(q). We performed the extraction of DNA from pure cultures and the detection of C. jejuni using the LAMP assay within 3 h. However, we were not able to reduce the time for the process of enrichment involved in our study. Therefore, we suggest that alternative enrichment media and rapid DNA extraction methods should be considered for further study. Compared to other traditional methods, our proposed assay requires less equipment and time, which is applicable at any processing steps in the food production chain.
format Online
Article
Text
id pubmed-8953776
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-89537762022-03-26 A Cutoff Determination of Real-Time Loop-Mediated Isothermal Amplification (LAMP) for End-Point Detection of Campylobacter jejuni in Chicken Meat Jainonthee, Chalita Chaisowwong, Warangkhana Ngamsanga, Phakamas Wiratsudakul, Anuwat Meeyam, Tongkorn Pichpol, Duangporn Vet Sci Article Campylobacter jejuni is one of the leading causes of foodborne illness worldwide. C. jejuni is commonly found in poultry. It is the most frequent cause of contamination and thus resulting in not only public health concerns but also economic impacts. To test for this bacterial contamination in food processing plants, this study attempted to employ a simple and rapid detection assay called loop-mediated isothermal amplification (LAMP). The best cutoff value for the positive determination of C. jejuni calculated using real-time LAMP quantification cycle (C(q)) was derived from the receiver operating characteristic (ROC) curve modeling. The model showed an area under curve (AUC) of 0.936 (95% Wald CI: 0.903–0.970). Based on Youden’s J statistic, the optimal cutoff value which had the highest sensitivity and specificity from the model was calculated as 18.07. The LAMP assay had 96.9% sensitivity, 95.8% specificity, and 93.9 and 97.9% positive and negative predictive values, respectively, compared to a standard culture approach for C. jejuni identification. Among all non-C. jejuni strains, the LAMP assay gave each of 12.5% false-positive results to C. coli and E. coli (1 out of 8 samples). The assay can detect C. jejuni at the lowest concentration of 10(3) CFU/mL. Our results suggest a preliminary indicator for the application of end-point LAMP assays, such as turbidity and UV fluorescence tests, to detect C. jejuni in field operations. The LAMP assay is an alternative screening test for C. jejuni contamination in food samples. The method provides a rapid detection, which requires only 9 min with a cutoff value of C(q). We performed the extraction of DNA from pure cultures and the detection of C. jejuni using the LAMP assay within 3 h. However, we were not able to reduce the time for the process of enrichment involved in our study. Therefore, we suggest that alternative enrichment media and rapid DNA extraction methods should be considered for further study. Compared to other traditional methods, our proposed assay requires less equipment and time, which is applicable at any processing steps in the food production chain. MDPI 2022-03-08 /pmc/articles/PMC8953776/ /pubmed/35324850 http://dx.doi.org/10.3390/vetsci9030122 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Jainonthee, Chalita
Chaisowwong, Warangkhana
Ngamsanga, Phakamas
Wiratsudakul, Anuwat
Meeyam, Tongkorn
Pichpol, Duangporn
A Cutoff Determination of Real-Time Loop-Mediated Isothermal Amplification (LAMP) for End-Point Detection of Campylobacter jejuni in Chicken Meat
title A Cutoff Determination of Real-Time Loop-Mediated Isothermal Amplification (LAMP) for End-Point Detection of Campylobacter jejuni in Chicken Meat
title_full A Cutoff Determination of Real-Time Loop-Mediated Isothermal Amplification (LAMP) for End-Point Detection of Campylobacter jejuni in Chicken Meat
title_fullStr A Cutoff Determination of Real-Time Loop-Mediated Isothermal Amplification (LAMP) for End-Point Detection of Campylobacter jejuni in Chicken Meat
title_full_unstemmed A Cutoff Determination of Real-Time Loop-Mediated Isothermal Amplification (LAMP) for End-Point Detection of Campylobacter jejuni in Chicken Meat
title_short A Cutoff Determination of Real-Time Loop-Mediated Isothermal Amplification (LAMP) for End-Point Detection of Campylobacter jejuni in Chicken Meat
title_sort cutoff determination of real-time loop-mediated isothermal amplification (lamp) for end-point detection of campylobacter jejuni in chicken meat
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8953776/
https://www.ncbi.nlm.nih.gov/pubmed/35324850
http://dx.doi.org/10.3390/vetsci9030122
work_keys_str_mv AT jainontheechalita acutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT chaisowwongwarangkhana acutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT ngamsangaphakamas acutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT wiratsudakulanuwat acutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT meeyamtongkorn acutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT pichpolduangporn acutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT jainontheechalita cutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT chaisowwongwarangkhana cutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT ngamsangaphakamas cutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT wiratsudakulanuwat cutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT meeyamtongkorn cutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat
AT pichpolduangporn cutoffdeterminationofrealtimeloopmediatedisothermalamplificationlampforendpointdetectionofcampylobacterjejuniinchickenmeat