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Effect of Denoising and Deblurring (18)F-Fluorodeoxyglucose Positron Emission Tomography Images on a Deep Learning Model’s Classification Performance for Alzheimer’s Disease
Alzheimer’s disease (AD) is the most common progressive neurodegenerative disease. (18)F-fluorodeoxyglucose positron emission tomography ((18)F-FDG PET) is widely used to predict AD using a deep learning model. However, the effects of noise and blurring on (18)F-FDG PET images were not considered. T...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8954205/ https://www.ncbi.nlm.nih.gov/pubmed/35323674 http://dx.doi.org/10.3390/metabo12030231 |
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author | Lee, Min-Hee Yun, Chang-Soo Kim, Kyuseok Lee, Youngjin |
author_facet | Lee, Min-Hee Yun, Chang-Soo Kim, Kyuseok Lee, Youngjin |
author_sort | Lee, Min-Hee |
collection | PubMed |
description | Alzheimer’s disease (AD) is the most common progressive neurodegenerative disease. (18)F-fluorodeoxyglucose positron emission tomography ((18)F-FDG PET) is widely used to predict AD using a deep learning model. However, the effects of noise and blurring on (18)F-FDG PET images were not considered. The performance of a classification model trained using raw, deblurred (by the fast total variation deblurring method), or denoised (by the median modified Wiener filter) (18)F-FDG PET images without or with cropping around the limbic system area using a 3D deep convolutional neural network was investigated. The classification model trained using denoised whole-brain (18)F-FDG PET images achieved classification performance (0.75/0.65/0.79/0.39 for sensitivity/specificity/F1-score/Matthews correlation coefficient (MCC), respectively) higher than that with raw and deblurred (18)F-FDG PET images. The classification model trained using cropped raw (18)F-FDG PET images achieved higher performance (0.78/0.63/0.81/0.40 for sensitivity/specificity/F1-score/MCC) than the whole-brain (18)F-FDG PET images (0.72/0.32/0.71/0.10 for sensitivity/specificity/F1-score/MCC, respectively). The (18)F-FDG PET image deblurring and cropping (0.89/0.67/0.88/0.57 for sensitivity/specificity/F1-score/MCC) procedures were the most helpful for improving performance. For this model, the right middle frontal, middle temporal, insula, and hippocampus areas were the most predictive of AD using the class activation map. Our findings demonstrate that (18)F-FDG PET image preprocessing and cropping improves the explainability and potential clinical applicability of deep learning models. |
format | Online Article Text |
id | pubmed-8954205 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-89542052022-03-26 Effect of Denoising and Deblurring (18)F-Fluorodeoxyglucose Positron Emission Tomography Images on a Deep Learning Model’s Classification Performance for Alzheimer’s Disease Lee, Min-Hee Yun, Chang-Soo Kim, Kyuseok Lee, Youngjin Metabolites Article Alzheimer’s disease (AD) is the most common progressive neurodegenerative disease. (18)F-fluorodeoxyglucose positron emission tomography ((18)F-FDG PET) is widely used to predict AD using a deep learning model. However, the effects of noise and blurring on (18)F-FDG PET images were not considered. The performance of a classification model trained using raw, deblurred (by the fast total variation deblurring method), or denoised (by the median modified Wiener filter) (18)F-FDG PET images without or with cropping around the limbic system area using a 3D deep convolutional neural network was investigated. The classification model trained using denoised whole-brain (18)F-FDG PET images achieved classification performance (0.75/0.65/0.79/0.39 for sensitivity/specificity/F1-score/Matthews correlation coefficient (MCC), respectively) higher than that with raw and deblurred (18)F-FDG PET images. The classification model trained using cropped raw (18)F-FDG PET images achieved higher performance (0.78/0.63/0.81/0.40 for sensitivity/specificity/F1-score/MCC) than the whole-brain (18)F-FDG PET images (0.72/0.32/0.71/0.10 for sensitivity/specificity/F1-score/MCC, respectively). The (18)F-FDG PET image deblurring and cropping (0.89/0.67/0.88/0.57 for sensitivity/specificity/F1-score/MCC) procedures were the most helpful for improving performance. For this model, the right middle frontal, middle temporal, insula, and hippocampus areas were the most predictive of AD using the class activation map. Our findings demonstrate that (18)F-FDG PET image preprocessing and cropping improves the explainability and potential clinical applicability of deep learning models. MDPI 2022-03-07 /pmc/articles/PMC8954205/ /pubmed/35323674 http://dx.doi.org/10.3390/metabo12030231 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Lee, Min-Hee Yun, Chang-Soo Kim, Kyuseok Lee, Youngjin Effect of Denoising and Deblurring (18)F-Fluorodeoxyglucose Positron Emission Tomography Images on a Deep Learning Model’s Classification Performance for Alzheimer’s Disease |
title | Effect of Denoising and Deblurring (18)F-Fluorodeoxyglucose Positron Emission Tomography Images on a Deep Learning Model’s Classification Performance for Alzheimer’s Disease |
title_full | Effect of Denoising and Deblurring (18)F-Fluorodeoxyglucose Positron Emission Tomography Images on a Deep Learning Model’s Classification Performance for Alzheimer’s Disease |
title_fullStr | Effect of Denoising and Deblurring (18)F-Fluorodeoxyglucose Positron Emission Tomography Images on a Deep Learning Model’s Classification Performance for Alzheimer’s Disease |
title_full_unstemmed | Effect of Denoising and Deblurring (18)F-Fluorodeoxyglucose Positron Emission Tomography Images on a Deep Learning Model’s Classification Performance for Alzheimer’s Disease |
title_short | Effect of Denoising and Deblurring (18)F-Fluorodeoxyglucose Positron Emission Tomography Images on a Deep Learning Model’s Classification Performance for Alzheimer’s Disease |
title_sort | effect of denoising and deblurring (18)f-fluorodeoxyglucose positron emission tomography images on a deep learning model’s classification performance for alzheimer’s disease |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8954205/ https://www.ncbi.nlm.nih.gov/pubmed/35323674 http://dx.doi.org/10.3390/metabo12030231 |
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