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Semantic Segmentation Dataset for AI-Based Quantification of Clean Mucosa in Capsule Endoscopy

Background and Objectives: Capsule endoscopy (CE) for bowel cleanliness evaluation primarily depends on subjective methods. To objectively evaluate bowel cleanliness, we focused on artificial intelligence (AI)-based assessments. We aimed to generate a large segmentation dataset from CE images and ve...

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Autores principales: Ju, Jeong-Woo, Jung, Heechul, Lee, Yeoun Joo, Mun, Sang-Wook, Lee, Jong-Hyuck
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8954405/
https://www.ncbi.nlm.nih.gov/pubmed/35334573
http://dx.doi.org/10.3390/medicina58030397
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author Ju, Jeong-Woo
Jung, Heechul
Lee, Yeoun Joo
Mun, Sang-Wook
Lee, Jong-Hyuck
author_facet Ju, Jeong-Woo
Jung, Heechul
Lee, Yeoun Joo
Mun, Sang-Wook
Lee, Jong-Hyuck
author_sort Ju, Jeong-Woo
collection PubMed
description Background and Objectives: Capsule endoscopy (CE) for bowel cleanliness evaluation primarily depends on subjective methods. To objectively evaluate bowel cleanliness, we focused on artificial intelligence (AI)-based assessments. We aimed to generate a large segmentation dataset from CE images and verify its quality using a convolutional neural network (CNN)-based algorithm. Materials and Methods: Images were extracted and divided into 10 stages according to the clean regions in a CE video. Each image was classified into three classes (clean, dark, and floats/bubbles) or two classes (clean and non-clean). Using this semantic segmentation dataset, a CNN training was performed with 169 videos, and a clean region (visualization scale (VS)) formula was developed. Then, measuring mean intersection over union (mIoU), Dice index, and clean mucosal predictions were performed. The VS performance was tested using 10 videos. Results: A total of 10,033 frames of the semantic segmentation dataset were constructed from 179 patients. The 3-class and 2-class semantic segmentation’s testing performance was 0.7716 mIoU (range: 0.7031–0.8071), 0.8627 Dice index (range: 0.7846–0.8891), and 0.8927 mIoU (range: 0.8562–0.9330), 0.9457 Dice index (range: 0.9225–0.9654), respectively. In addition, the 3-class and 2-class clean mucosal prediction accuracy was 94.4% and 95.7%, respectively. The VS prediction performance for both 3-class and 2-class segmentation was almost identical to the ground truth. Conclusions: We established a semantic segmentation dataset spanning 10 stages uniformly from 179 patients. The prediction accuracy for clean mucosa was significantly high (above 94%). Our VS equation can approximately measure the region of clean mucosa. These results confirmed our dataset to be ideal for an accurate and quantitative assessment of AI-based bowel cleanliness.
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spelling pubmed-89544052022-03-26 Semantic Segmentation Dataset for AI-Based Quantification of Clean Mucosa in Capsule Endoscopy Ju, Jeong-Woo Jung, Heechul Lee, Yeoun Joo Mun, Sang-Wook Lee, Jong-Hyuck Medicina (Kaunas) Article Background and Objectives: Capsule endoscopy (CE) for bowel cleanliness evaluation primarily depends on subjective methods. To objectively evaluate bowel cleanliness, we focused on artificial intelligence (AI)-based assessments. We aimed to generate a large segmentation dataset from CE images and verify its quality using a convolutional neural network (CNN)-based algorithm. Materials and Methods: Images were extracted and divided into 10 stages according to the clean regions in a CE video. Each image was classified into three classes (clean, dark, and floats/bubbles) or two classes (clean and non-clean). Using this semantic segmentation dataset, a CNN training was performed with 169 videos, and a clean region (visualization scale (VS)) formula was developed. Then, measuring mean intersection over union (mIoU), Dice index, and clean mucosal predictions were performed. The VS performance was tested using 10 videos. Results: A total of 10,033 frames of the semantic segmentation dataset were constructed from 179 patients. The 3-class and 2-class semantic segmentation’s testing performance was 0.7716 mIoU (range: 0.7031–0.8071), 0.8627 Dice index (range: 0.7846–0.8891), and 0.8927 mIoU (range: 0.8562–0.9330), 0.9457 Dice index (range: 0.9225–0.9654), respectively. In addition, the 3-class and 2-class clean mucosal prediction accuracy was 94.4% and 95.7%, respectively. The VS prediction performance for both 3-class and 2-class segmentation was almost identical to the ground truth. Conclusions: We established a semantic segmentation dataset spanning 10 stages uniformly from 179 patients. The prediction accuracy for clean mucosa was significantly high (above 94%). Our VS equation can approximately measure the region of clean mucosa. These results confirmed our dataset to be ideal for an accurate and quantitative assessment of AI-based bowel cleanliness. MDPI 2022-03-07 /pmc/articles/PMC8954405/ /pubmed/35334573 http://dx.doi.org/10.3390/medicina58030397 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ju, Jeong-Woo
Jung, Heechul
Lee, Yeoun Joo
Mun, Sang-Wook
Lee, Jong-Hyuck
Semantic Segmentation Dataset for AI-Based Quantification of Clean Mucosa in Capsule Endoscopy
title Semantic Segmentation Dataset for AI-Based Quantification of Clean Mucosa in Capsule Endoscopy
title_full Semantic Segmentation Dataset for AI-Based Quantification of Clean Mucosa in Capsule Endoscopy
title_fullStr Semantic Segmentation Dataset for AI-Based Quantification of Clean Mucosa in Capsule Endoscopy
title_full_unstemmed Semantic Segmentation Dataset for AI-Based Quantification of Clean Mucosa in Capsule Endoscopy
title_short Semantic Segmentation Dataset for AI-Based Quantification of Clean Mucosa in Capsule Endoscopy
title_sort semantic segmentation dataset for ai-based quantification of clean mucosa in capsule endoscopy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8954405/
https://www.ncbi.nlm.nih.gov/pubmed/35334573
http://dx.doi.org/10.3390/medicina58030397
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