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The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae

Devastating fungi are one of the most important biotic factors associated with numerous infectious diseases not only in plants but in animals and humans too. Arthrinium rasikravindrae a devastating fungus is responsible for severe infections in a large number of host plants all over the world. In th...

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Autores principales: Majeedano, Abdul Qayoom, Chen, Jie, Zhu, Tianhui, Li, Shujiang, Gishkori, Zeeshan Ghulam Nabi, Mastoi, Sumbul Mureed, Wang, Gang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8954856/
https://www.ncbi.nlm.nih.gov/pubmed/35330257
http://dx.doi.org/10.3390/jof8030255
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author Majeedano, Abdul Qayoom
Chen, Jie
Zhu, Tianhui
Li, Shujiang
Gishkori, Zeeshan Ghulam Nabi
Mastoi, Sumbul Mureed
Wang, Gang
author_facet Majeedano, Abdul Qayoom
Chen, Jie
Zhu, Tianhui
Li, Shujiang
Gishkori, Zeeshan Ghulam Nabi
Mastoi, Sumbul Mureed
Wang, Gang
author_sort Majeedano, Abdul Qayoom
collection PubMed
description Devastating fungi are one of the most important biotic factors associated with numerous infectious diseases not only in plants but in animals and humans too. Arthrinium rasikravindrae a devastating fungus is responsible for severe infections in a large number of host plants all over the world. In the present study, we analyzed the whole genome sequence of devastating fungus A. rasikravindrae strain AQZ-20, using Illumina Technology from the Novogene Bio-informatics Co., Ltd. Beijing, China. To identify associated annotation results, various corresponding functional annotations databases were utilized. The genome size was 48.24 MB with an N90 (scaffolds) length of 2,184,859 bp and encoded putative genes were 11,101, respectively. In addition, we evaluated the comparative genomic analyses with 4 fungal strains of Ascomycetes. Two related species showed a strong correlation while others exhibited a weak correlation with the A. rasikravindrae AQZ-20 fungus. This study is a discovery of the genome-scale assembly, as well as annotation for A. rasikravindrae. The results obtained from the whole genome sequencing and genomic resources developed in this study will contribute significantly to genetic improvement applications against diseases caused by A. rasikravindrae. In addition, the phylogenetic tree, followed by genomic RNA, transcriptomic, proteomic, metabolic, as well as pathogenic data reported in current research will provide deep insight for further studies in the future.
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spelling pubmed-89548562022-03-26 The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae Majeedano, Abdul Qayoom Chen, Jie Zhu, Tianhui Li, Shujiang Gishkori, Zeeshan Ghulam Nabi Mastoi, Sumbul Mureed Wang, Gang J Fungi (Basel) Article Devastating fungi are one of the most important biotic factors associated with numerous infectious diseases not only in plants but in animals and humans too. Arthrinium rasikravindrae a devastating fungus is responsible for severe infections in a large number of host plants all over the world. In the present study, we analyzed the whole genome sequence of devastating fungus A. rasikravindrae strain AQZ-20, using Illumina Technology from the Novogene Bio-informatics Co., Ltd. Beijing, China. To identify associated annotation results, various corresponding functional annotations databases were utilized. The genome size was 48.24 MB with an N90 (scaffolds) length of 2,184,859 bp and encoded putative genes were 11,101, respectively. In addition, we evaluated the comparative genomic analyses with 4 fungal strains of Ascomycetes. Two related species showed a strong correlation while others exhibited a weak correlation with the A. rasikravindrae AQZ-20 fungus. This study is a discovery of the genome-scale assembly, as well as annotation for A. rasikravindrae. The results obtained from the whole genome sequencing and genomic resources developed in this study will contribute significantly to genetic improvement applications against diseases caused by A. rasikravindrae. In addition, the phylogenetic tree, followed by genomic RNA, transcriptomic, proteomic, metabolic, as well as pathogenic data reported in current research will provide deep insight for further studies in the future. MDPI 2022-03-02 /pmc/articles/PMC8954856/ /pubmed/35330257 http://dx.doi.org/10.3390/jof8030255 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Majeedano, Abdul Qayoom
Chen, Jie
Zhu, Tianhui
Li, Shujiang
Gishkori, Zeeshan Ghulam Nabi
Mastoi, Sumbul Mureed
Wang, Gang
The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae
title The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae
title_full The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae
title_fullStr The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae
title_full_unstemmed The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae
title_short The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae
title_sort first whole genome sequence discovery of the devastating fungus arthrinium rasikravindrae
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8954856/
https://www.ncbi.nlm.nih.gov/pubmed/35330257
http://dx.doi.org/10.3390/jof8030255
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