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Functional implications of aging-related lncRNAs for predicting prognosis and immune status in glioma patients

This study is aimed to establish a new glioma prognosis model by integrating the aging-related lncRNA expression profiles and clinical parameters of glioma patients enrolled in the Chinese Glioma Genome Atlas and The Cancer Genome Atlas. The aging-related lncRNAs were explored using Pearson correlat...

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Autores principales: Zhang, Guangying, Li, Yanyan, Li, Na, Shen, Liang-Fang, Li, Zhanzhan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8954967/
https://www.ncbi.nlm.nih.gov/pubmed/35273128
http://dx.doi.org/10.18632/aging.203944
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author Zhang, Guangying
Li, Yanyan
Li, Na
Shen, Liang-Fang
Li, Zhanzhan
author_facet Zhang, Guangying
Li, Yanyan
Li, Na
Shen, Liang-Fang
Li, Zhanzhan
author_sort Zhang, Guangying
collection PubMed
description This study is aimed to establish a new glioma prognosis model by integrating the aging-related lncRNA expression profiles and clinical parameters of glioma patients enrolled in the Chinese Glioma Genome Atlas and The Cancer Genome Atlas. The aging-related lncRNAs were explored using Pearson correlation analysis (|R|> 0.6, P < 0.001), and the prognostic signature in glioma patients was screened using univariate cox regression and least absolute shrinkage/selection operator regression. Based on the fifteen lncRNAs screened out, we divided the glioma patients into three subtypes, and developed a prognostic model. Kaplan-Meier survival curve analysis showed that low-risk patients survived longer time than high-risk patients. Principal component analysis indicated that the signature of aging-related lncRNAs was clearly distinct between the high- and low-risk groups. We also found the fifteen lncRNAs were closely correlated with 119 genes by establishing a co-expression network. Kyoto Encyclopedia of Genes and Genomes analysis displayed that the high- and low-risk groups were enriched in different functions and pathways. Different missense mutations were observed in the two groups, and the most frequent variant types were single nucleotide polymorphism. This study demonstrates that the novel aging-related lncRNAs signature has an important prognosis prediction ability and may contribute to individualized treatment for glioma.
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spelling pubmed-89549672022-03-28 Functional implications of aging-related lncRNAs for predicting prognosis and immune status in glioma patients Zhang, Guangying Li, Yanyan Li, Na Shen, Liang-Fang Li, Zhanzhan Aging (Albany NY) Research Paper This study is aimed to establish a new glioma prognosis model by integrating the aging-related lncRNA expression profiles and clinical parameters of glioma patients enrolled in the Chinese Glioma Genome Atlas and The Cancer Genome Atlas. The aging-related lncRNAs were explored using Pearson correlation analysis (|R|> 0.6, P < 0.001), and the prognostic signature in glioma patients was screened using univariate cox regression and least absolute shrinkage/selection operator regression. Based on the fifteen lncRNAs screened out, we divided the glioma patients into three subtypes, and developed a prognostic model. Kaplan-Meier survival curve analysis showed that low-risk patients survived longer time than high-risk patients. Principal component analysis indicated that the signature of aging-related lncRNAs was clearly distinct between the high- and low-risk groups. We also found the fifteen lncRNAs were closely correlated with 119 genes by establishing a co-expression network. Kyoto Encyclopedia of Genes and Genomes analysis displayed that the high- and low-risk groups were enriched in different functions and pathways. Different missense mutations were observed in the two groups, and the most frequent variant types were single nucleotide polymorphism. This study demonstrates that the novel aging-related lncRNAs signature has an important prognosis prediction ability and may contribute to individualized treatment for glioma. Impact Journals 2022-03-10 /pmc/articles/PMC8954967/ /pubmed/35273128 http://dx.doi.org/10.18632/aging.203944 Text en Copyright: © 2022 Zhang et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Zhang, Guangying
Li, Yanyan
Li, Na
Shen, Liang-Fang
Li, Zhanzhan
Functional implications of aging-related lncRNAs for predicting prognosis and immune status in glioma patients
title Functional implications of aging-related lncRNAs for predicting prognosis and immune status in glioma patients
title_full Functional implications of aging-related lncRNAs for predicting prognosis and immune status in glioma patients
title_fullStr Functional implications of aging-related lncRNAs for predicting prognosis and immune status in glioma patients
title_full_unstemmed Functional implications of aging-related lncRNAs for predicting prognosis and immune status in glioma patients
title_short Functional implications of aging-related lncRNAs for predicting prognosis and immune status in glioma patients
title_sort functional implications of aging-related lncrnas for predicting prognosis and immune status in glioma patients
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8954967/
https://www.ncbi.nlm.nih.gov/pubmed/35273128
http://dx.doi.org/10.18632/aging.203944
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