Cargando…
Polymorphism rs3742330 in microRNA Biogenesis Gene DICER1 Is Associated with Pseudoexfoliation Glaucoma in Saudi Cohort
We investigated the association between DICER1 (rs3742330) and DROSHA (rs10719) polymorphisms and pseudoexfoliation glaucoma (PXG) and related clinical phenotypes in a Saudi cohort. In a retrospective case-control study, TaqMan real-time, PCR-based genotyping was performed in 340 participants with 2...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8956095/ https://www.ncbi.nlm.nih.gov/pubmed/35328042 http://dx.doi.org/10.3390/genes13030489 |
_version_ | 1784676494687076352 |
---|---|
author | Kondkar, Altaf A. Azad, Taif A. Sultan, Tahira Radhakrishnan, Rakesh Osman, Essam A. Almobarak, Faisal A. Lobo, Glenn P. Al-Obeidan, Saleh A. |
author_facet | Kondkar, Altaf A. Azad, Taif A. Sultan, Tahira Radhakrishnan, Rakesh Osman, Essam A. Almobarak, Faisal A. Lobo, Glenn P. Al-Obeidan, Saleh A. |
author_sort | Kondkar, Altaf A. |
collection | PubMed |
description | We investigated the association between DICER1 (rs3742330) and DROSHA (rs10719) polymorphisms and pseudoexfoliation glaucoma (PXG) and related clinical phenotypes in a Saudi cohort. In a retrospective case-control study, TaqMan real-time, PCR-based genotyping was performed in 340 participants with 246 controls and 94 PXG cases. The minor (G) allele frequency of rs3742330 in PXG (0.03) was significantly different from that in the controls (0.08) and protective against PXG (odds ratio (OR) = 0.38, 95% confidence interval (CI) = 0.16–0.92), p = 0.017). Similarly, the rs3742330 genotypes showed a significant protective association with PXG in dominant (p = 0.019, OR = 0.38, 95% CI = 0.15–0.92), over-dominant (p = 0.024, OR = 0.39, 95% CI = 0.16–0.95), and log-additive models (p = 0.017, OR = 0.38, 95% CI = 0.16–0.92). However, none remained significant after an adjustment for age, sex, and multiple testing. Rs10719 in DROSHA did not show any significant allelic or genotype association with PXG. However, a protective effect of the GA haplotype in DICER1 and DROSHA and PXG (p = 0.034) was observed. Both polymorphisms showed no significant effect on intraocular pressure and the cup–disk ratio. In conclusion, we report a significant genetic association between variant rs3742330 in DICER1, a gene involved in miRNA biogenesis, and PXG. Further investigation in a larger group of patients of different ethnicities and functional studies are warranted to replicate and validate its potential role in PXG. |
format | Online Article Text |
id | pubmed-8956095 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-89560952022-03-26 Polymorphism rs3742330 in microRNA Biogenesis Gene DICER1 Is Associated with Pseudoexfoliation Glaucoma in Saudi Cohort Kondkar, Altaf A. Azad, Taif A. Sultan, Tahira Radhakrishnan, Rakesh Osman, Essam A. Almobarak, Faisal A. Lobo, Glenn P. Al-Obeidan, Saleh A. Genes (Basel) Article We investigated the association between DICER1 (rs3742330) and DROSHA (rs10719) polymorphisms and pseudoexfoliation glaucoma (PXG) and related clinical phenotypes in a Saudi cohort. In a retrospective case-control study, TaqMan real-time, PCR-based genotyping was performed in 340 participants with 246 controls and 94 PXG cases. The minor (G) allele frequency of rs3742330 in PXG (0.03) was significantly different from that in the controls (0.08) and protective against PXG (odds ratio (OR) = 0.38, 95% confidence interval (CI) = 0.16–0.92), p = 0.017). Similarly, the rs3742330 genotypes showed a significant protective association with PXG in dominant (p = 0.019, OR = 0.38, 95% CI = 0.15–0.92), over-dominant (p = 0.024, OR = 0.39, 95% CI = 0.16–0.95), and log-additive models (p = 0.017, OR = 0.38, 95% CI = 0.16–0.92). However, none remained significant after an adjustment for age, sex, and multiple testing. Rs10719 in DROSHA did not show any significant allelic or genotype association with PXG. However, a protective effect of the GA haplotype in DICER1 and DROSHA and PXG (p = 0.034) was observed. Both polymorphisms showed no significant effect on intraocular pressure and the cup–disk ratio. In conclusion, we report a significant genetic association between variant rs3742330 in DICER1, a gene involved in miRNA biogenesis, and PXG. Further investigation in a larger group of patients of different ethnicities and functional studies are warranted to replicate and validate its potential role in PXG. MDPI 2022-03-10 /pmc/articles/PMC8956095/ /pubmed/35328042 http://dx.doi.org/10.3390/genes13030489 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kondkar, Altaf A. Azad, Taif A. Sultan, Tahira Radhakrishnan, Rakesh Osman, Essam A. Almobarak, Faisal A. Lobo, Glenn P. Al-Obeidan, Saleh A. Polymorphism rs3742330 in microRNA Biogenesis Gene DICER1 Is Associated with Pseudoexfoliation Glaucoma in Saudi Cohort |
title | Polymorphism rs3742330 in microRNA Biogenesis Gene DICER1 Is Associated with Pseudoexfoliation Glaucoma in Saudi Cohort |
title_full | Polymorphism rs3742330 in microRNA Biogenesis Gene DICER1 Is Associated with Pseudoexfoliation Glaucoma in Saudi Cohort |
title_fullStr | Polymorphism rs3742330 in microRNA Biogenesis Gene DICER1 Is Associated with Pseudoexfoliation Glaucoma in Saudi Cohort |
title_full_unstemmed | Polymorphism rs3742330 in microRNA Biogenesis Gene DICER1 Is Associated with Pseudoexfoliation Glaucoma in Saudi Cohort |
title_short | Polymorphism rs3742330 in microRNA Biogenesis Gene DICER1 Is Associated with Pseudoexfoliation Glaucoma in Saudi Cohort |
title_sort | polymorphism rs3742330 in microrna biogenesis gene dicer1 is associated with pseudoexfoliation glaucoma in saudi cohort |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8956095/ https://www.ncbi.nlm.nih.gov/pubmed/35328042 http://dx.doi.org/10.3390/genes13030489 |
work_keys_str_mv | AT kondkaraltafa polymorphismrs3742330inmicrornabiogenesisgenedicer1isassociatedwithpseudoexfoliationglaucomainsaudicohort AT azadtaifa polymorphismrs3742330inmicrornabiogenesisgenedicer1isassociatedwithpseudoexfoliationglaucomainsaudicohort AT sultantahira polymorphismrs3742330inmicrornabiogenesisgenedicer1isassociatedwithpseudoexfoliationglaucomainsaudicohort AT radhakrishnanrakesh polymorphismrs3742330inmicrornabiogenesisgenedicer1isassociatedwithpseudoexfoliationglaucomainsaudicohort AT osmanessama polymorphismrs3742330inmicrornabiogenesisgenedicer1isassociatedwithpseudoexfoliationglaucomainsaudicohort AT almobarakfaisala polymorphismrs3742330inmicrornabiogenesisgenedicer1isassociatedwithpseudoexfoliationglaucomainsaudicohort AT loboglennp polymorphismrs3742330inmicrornabiogenesisgenedicer1isassociatedwithpseudoexfoliationglaucomainsaudicohort AT alobeidansaleha polymorphismrs3742330inmicrornabiogenesisgenedicer1isassociatedwithpseudoexfoliationglaucomainsaudicohort |