Cargando…
Endoplasmic Reticulum Stress-Related Four-Biomarker Risk Classifier for Survival Evaluation in Esophageal Cancer
PURPOSE: Esophageal cancer (EC) is a lethal digestive tumor worldwide with a dismal clinical outcome. Endoplasmic reticulum (ER) stress poses essential implications for a variety of tumor malignant behaviors. Here, we set up an ER stress-based risk classifier for assessing patient outcome and exploi...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8956413/ https://www.ncbi.nlm.nih.gov/pubmed/35342421 http://dx.doi.org/10.1155/2022/5860671 |
_version_ | 1784676563693862912 |
---|---|
author | Xu, Xiang Tang, Yeqing Zhu, Jiashan Luo, Jinhua |
author_facet | Xu, Xiang Tang, Yeqing Zhu, Jiashan Luo, Jinhua |
author_sort | Xu, Xiang |
collection | PubMed |
description | PURPOSE: Esophageal cancer (EC) is a lethal digestive tumor worldwide with a dismal clinical outcome. Endoplasmic reticulum (ER) stress poses essential implications for a variety of tumor malignant behaviors. Here, we set up an ER stress-based risk classifier for assessing patient outcome and exploiting robust targets for medical decision-making of EC cases. METHODS: 340 EC cases with transcriptome and survival data from two independent public datasets (TCGA and GEO) were recruited for this project. Cox regression analyses were employed to create a risk classifier based on ER stress-related genes (ERGs) which were strongly linked to EC cases' outcomes. Then, we detected and confirmed the predictive ability of our proposed classifier via a host of statistical methods, including survival analysis and ROC method. In addition, immune-associated algorithm was implemented to analyze the immune activity of EC samples. RESULTS: Four EGRs (BCAP31, HSPD1, PDHA1, and UBE2D1) were selected to build an EGR-related classifier (ERC). This classifier could distinguish the patients into different risky subgroups. The remarkable differences in patient outcome between the two groups were observed, and similar results were also confirmed in GEO cohort. In terms of the immune analysis, the ERC could forecast the infiltration level of immunocytes, such as Tregs and NK cells. CONCLUSION: We created a four-ERG risk classifier which displays the powerful capability of survival evaluation for EC cases. |
format | Online Article Text |
id | pubmed-8956413 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-89564132022-03-26 Endoplasmic Reticulum Stress-Related Four-Biomarker Risk Classifier for Survival Evaluation in Esophageal Cancer Xu, Xiang Tang, Yeqing Zhu, Jiashan Luo, Jinhua J Oncol Research Article PURPOSE: Esophageal cancer (EC) is a lethal digestive tumor worldwide with a dismal clinical outcome. Endoplasmic reticulum (ER) stress poses essential implications for a variety of tumor malignant behaviors. Here, we set up an ER stress-based risk classifier for assessing patient outcome and exploiting robust targets for medical decision-making of EC cases. METHODS: 340 EC cases with transcriptome and survival data from two independent public datasets (TCGA and GEO) were recruited for this project. Cox regression analyses were employed to create a risk classifier based on ER stress-related genes (ERGs) which were strongly linked to EC cases' outcomes. Then, we detected and confirmed the predictive ability of our proposed classifier via a host of statistical methods, including survival analysis and ROC method. In addition, immune-associated algorithm was implemented to analyze the immune activity of EC samples. RESULTS: Four EGRs (BCAP31, HSPD1, PDHA1, and UBE2D1) were selected to build an EGR-related classifier (ERC). This classifier could distinguish the patients into different risky subgroups. The remarkable differences in patient outcome between the two groups were observed, and similar results were also confirmed in GEO cohort. In terms of the immune analysis, the ERC could forecast the infiltration level of immunocytes, such as Tregs and NK cells. CONCLUSION: We created a four-ERG risk classifier which displays the powerful capability of survival evaluation for EC cases. Hindawi 2022-03-18 /pmc/articles/PMC8956413/ /pubmed/35342421 http://dx.doi.org/10.1155/2022/5860671 Text en Copyright © 2022 Xiang Xu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Xu, Xiang Tang, Yeqing Zhu, Jiashan Luo, Jinhua Endoplasmic Reticulum Stress-Related Four-Biomarker Risk Classifier for Survival Evaluation in Esophageal Cancer |
title | Endoplasmic Reticulum Stress-Related Four-Biomarker Risk Classifier for Survival Evaluation in Esophageal Cancer |
title_full | Endoplasmic Reticulum Stress-Related Four-Biomarker Risk Classifier for Survival Evaluation in Esophageal Cancer |
title_fullStr | Endoplasmic Reticulum Stress-Related Four-Biomarker Risk Classifier for Survival Evaluation in Esophageal Cancer |
title_full_unstemmed | Endoplasmic Reticulum Stress-Related Four-Biomarker Risk Classifier for Survival Evaluation in Esophageal Cancer |
title_short | Endoplasmic Reticulum Stress-Related Four-Biomarker Risk Classifier for Survival Evaluation in Esophageal Cancer |
title_sort | endoplasmic reticulum stress-related four-biomarker risk classifier for survival evaluation in esophageal cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8956413/ https://www.ncbi.nlm.nih.gov/pubmed/35342421 http://dx.doi.org/10.1155/2022/5860671 |
work_keys_str_mv | AT xuxiang endoplasmicreticulumstressrelatedfourbiomarkerriskclassifierforsurvivalevaluationinesophagealcancer AT tangyeqing endoplasmicreticulumstressrelatedfourbiomarkerriskclassifierforsurvivalevaluationinesophagealcancer AT zhujiashan endoplasmicreticulumstressrelatedfourbiomarkerriskclassifierforsurvivalevaluationinesophagealcancer AT luojinhua endoplasmicreticulumstressrelatedfourbiomarkerriskclassifierforsurvivalevaluationinesophagealcancer |