Cargando…
Network Crosstalk as a Basis for Drug Repurposing
The need for systematic drug repurposing has seen a steady increase over the past decade and may be particularly valuable to quickly remedy unexpected pandemics. The abundance of functional interaction data has allowed mapping of substantial parts of the human interactome modeled using functional as...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8958038/ https://www.ncbi.nlm.nih.gov/pubmed/35350247 http://dx.doi.org/10.3389/fgene.2022.792090 |
_version_ | 1784676864102498304 |
---|---|
author | Guala, Dimitri Sonnhammer, Erik L. L. |
author_facet | Guala, Dimitri Sonnhammer, Erik L. L. |
author_sort | Guala, Dimitri |
collection | PubMed |
description | The need for systematic drug repurposing has seen a steady increase over the past decade and may be particularly valuable to quickly remedy unexpected pandemics. The abundance of functional interaction data has allowed mapping of substantial parts of the human interactome modeled using functional association networks, favoring network-based drug repurposing. Network crosstalk-based approaches have never been tested for drug repurposing despite their success in the related and more mature field of pathway enrichment analysis. We have, therefore, evaluated the top performing crosstalk-based approaches for drug repurposing. Additionally, the volume of new interaction data as well as more sophisticated network integration approaches compelled us to construct a new benchmark for performance assessment of network-based drug repurposing tools, which we used to compare network crosstalk-based methods with a state-of-the-art technique. We find that network crosstalk-based drug repurposing is able to rival the state-of-the-art method and in some cases outperform it. |
format | Online Article Text |
id | pubmed-8958038 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89580382022-03-28 Network Crosstalk as a Basis for Drug Repurposing Guala, Dimitri Sonnhammer, Erik L. L. Front Genet Genetics The need for systematic drug repurposing has seen a steady increase over the past decade and may be particularly valuable to quickly remedy unexpected pandemics. The abundance of functional interaction data has allowed mapping of substantial parts of the human interactome modeled using functional association networks, favoring network-based drug repurposing. Network crosstalk-based approaches have never been tested for drug repurposing despite their success in the related and more mature field of pathway enrichment analysis. We have, therefore, evaluated the top performing crosstalk-based approaches for drug repurposing. Additionally, the volume of new interaction data as well as more sophisticated network integration approaches compelled us to construct a new benchmark for performance assessment of network-based drug repurposing tools, which we used to compare network crosstalk-based methods with a state-of-the-art technique. We find that network crosstalk-based drug repurposing is able to rival the state-of-the-art method and in some cases outperform it. Frontiers Media S.A. 2022-03-08 /pmc/articles/PMC8958038/ /pubmed/35350247 http://dx.doi.org/10.3389/fgene.2022.792090 Text en Copyright © 2022 Guala and Sonnhammer. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Guala, Dimitri Sonnhammer, Erik L. L. Network Crosstalk as a Basis for Drug Repurposing |
title | Network Crosstalk as a Basis for Drug Repurposing |
title_full | Network Crosstalk as a Basis for Drug Repurposing |
title_fullStr | Network Crosstalk as a Basis for Drug Repurposing |
title_full_unstemmed | Network Crosstalk as a Basis for Drug Repurposing |
title_short | Network Crosstalk as a Basis for Drug Repurposing |
title_sort | network crosstalk as a basis for drug repurposing |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8958038/ https://www.ncbi.nlm.nih.gov/pubmed/35350247 http://dx.doi.org/10.3389/fgene.2022.792090 |
work_keys_str_mv | AT gualadimitri networkcrosstalkasabasisfordrugrepurposing AT sonnhammererikll networkcrosstalkasabasisfordrugrepurposing |