Cargando…
Simulations of molecular photodynamics in long timescales
Nonadiabatic dynamics simulations in the long timescale (much longer than 10 ps) are the next challenge in computational photochemistry. This paper delimits the scope of what we expect from methods to run such simulations: they should work in full nuclear dimensionality, be general enough to tackle...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8958277/ https://www.ncbi.nlm.nih.gov/pubmed/35341303 http://dx.doi.org/10.1098/rsta.2020.0382 |
_version_ | 1784676912904273920 |
---|---|
author | Mukherjee, Saikat Pinheiro, Max Demoulin, Baptiste Barbatti, Mario |
author_facet | Mukherjee, Saikat Pinheiro, Max Demoulin, Baptiste Barbatti, Mario |
author_sort | Mukherjee, Saikat |
collection | PubMed |
description | Nonadiabatic dynamics simulations in the long timescale (much longer than 10 ps) are the next challenge in computational photochemistry. This paper delimits the scope of what we expect from methods to run such simulations: they should work in full nuclear dimensionality, be general enough to tackle any type of molecule and not require unrealistic computational resources. We examine the main methodological challenges we should venture to advance the field, including the computational costs of the electronic structure calculations, stability of the integration methods, accuracy of the nonadiabatic dynamics algorithms and software optimization. Based on simulations designed to shed light on each of these issues, we show how machine learning may be a crucial element for long time-scale dynamics, either as a surrogate for electronic structure calculations or aiding the parameterization of model Hamiltonians. We show that conventional methods for integrating classical equations should be adequate to extended simulations up to 1 ns and that surface hopping agrees semiquantitatively with wave packet propagation in the weak-coupling regime. We also describe our optimization of the Newton-X program to reduce computational overheads in data processing and storage. This article is part of the theme issue ‘Chemistry without the Born–Oppenheimer approximation’. |
format | Online Article Text |
id | pubmed-8958277 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-89582772022-04-12 Simulations of molecular photodynamics in long timescales Mukherjee, Saikat Pinheiro, Max Demoulin, Baptiste Barbatti, Mario Philos Trans A Math Phys Eng Sci Articles Nonadiabatic dynamics simulations in the long timescale (much longer than 10 ps) are the next challenge in computational photochemistry. This paper delimits the scope of what we expect from methods to run such simulations: they should work in full nuclear dimensionality, be general enough to tackle any type of molecule and not require unrealistic computational resources. We examine the main methodological challenges we should venture to advance the field, including the computational costs of the electronic structure calculations, stability of the integration methods, accuracy of the nonadiabatic dynamics algorithms and software optimization. Based on simulations designed to shed light on each of these issues, we show how machine learning may be a crucial element for long time-scale dynamics, either as a surrogate for electronic structure calculations or aiding the parameterization of model Hamiltonians. We show that conventional methods for integrating classical equations should be adequate to extended simulations up to 1 ns and that surface hopping agrees semiquantitatively with wave packet propagation in the weak-coupling regime. We also describe our optimization of the Newton-X program to reduce computational overheads in data processing and storage. This article is part of the theme issue ‘Chemistry without the Born–Oppenheimer approximation’. The Royal Society 2022-05-16 2022-03-28 /pmc/articles/PMC8958277/ /pubmed/35341303 http://dx.doi.org/10.1098/rsta.2020.0382 Text en © 2022 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Articles Mukherjee, Saikat Pinheiro, Max Demoulin, Baptiste Barbatti, Mario Simulations of molecular photodynamics in long timescales |
title | Simulations of molecular photodynamics in long timescales |
title_full | Simulations of molecular photodynamics in long timescales |
title_fullStr | Simulations of molecular photodynamics in long timescales |
title_full_unstemmed | Simulations of molecular photodynamics in long timescales |
title_short | Simulations of molecular photodynamics in long timescales |
title_sort | simulations of molecular photodynamics in long timescales |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8958277/ https://www.ncbi.nlm.nih.gov/pubmed/35341303 http://dx.doi.org/10.1098/rsta.2020.0382 |
work_keys_str_mv | AT mukherjeesaikat simulationsofmolecularphotodynamicsinlongtimescales AT pinheiromax simulationsofmolecularphotodynamicsinlongtimescales AT demoulinbaptiste simulationsofmolecularphotodynamicsinlongtimescales AT barbattimario simulationsofmolecularphotodynamicsinlongtimescales |