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Simulations of molecular photodynamics in long timescales

Nonadiabatic dynamics simulations in the long timescale (much longer than 10 ps) are the next challenge in computational photochemistry. This paper delimits the scope of what we expect from methods to run such simulations: they should work in full nuclear dimensionality, be general enough to tackle...

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Detalles Bibliográficos
Autores principales: Mukherjee, Saikat, Pinheiro, Max, Demoulin, Baptiste, Barbatti, Mario
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8958277/
https://www.ncbi.nlm.nih.gov/pubmed/35341303
http://dx.doi.org/10.1098/rsta.2020.0382
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author Mukherjee, Saikat
Pinheiro, Max
Demoulin, Baptiste
Barbatti, Mario
author_facet Mukherjee, Saikat
Pinheiro, Max
Demoulin, Baptiste
Barbatti, Mario
author_sort Mukherjee, Saikat
collection PubMed
description Nonadiabatic dynamics simulations in the long timescale (much longer than 10 ps) are the next challenge in computational photochemistry. This paper delimits the scope of what we expect from methods to run such simulations: they should work in full nuclear dimensionality, be general enough to tackle any type of molecule and not require unrealistic computational resources. We examine the main methodological challenges we should venture to advance the field, including the computational costs of the electronic structure calculations, stability of the integration methods, accuracy of the nonadiabatic dynamics algorithms and software optimization. Based on simulations designed to shed light on each of these issues, we show how machine learning may be a crucial element for long time-scale dynamics, either as a surrogate for electronic structure calculations or aiding the parameterization of model Hamiltonians. We show that conventional methods for integrating classical equations should be adequate to extended simulations up to 1 ns and that surface hopping agrees semiquantitatively with wave packet propagation in the weak-coupling regime. We also describe our optimization of the Newton-X program to reduce computational overheads in data processing and storage. This article is part of the theme issue ‘Chemistry without the Born–Oppenheimer approximation’.
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spelling pubmed-89582772022-04-12 Simulations of molecular photodynamics in long timescales Mukherjee, Saikat Pinheiro, Max Demoulin, Baptiste Barbatti, Mario Philos Trans A Math Phys Eng Sci Articles Nonadiabatic dynamics simulations in the long timescale (much longer than 10 ps) are the next challenge in computational photochemistry. This paper delimits the scope of what we expect from methods to run such simulations: they should work in full nuclear dimensionality, be general enough to tackle any type of molecule and not require unrealistic computational resources. We examine the main methodological challenges we should venture to advance the field, including the computational costs of the electronic structure calculations, stability of the integration methods, accuracy of the nonadiabatic dynamics algorithms and software optimization. Based on simulations designed to shed light on each of these issues, we show how machine learning may be a crucial element for long time-scale dynamics, either as a surrogate for electronic structure calculations or aiding the parameterization of model Hamiltonians. We show that conventional methods for integrating classical equations should be adequate to extended simulations up to 1 ns and that surface hopping agrees semiquantitatively with wave packet propagation in the weak-coupling regime. We also describe our optimization of the Newton-X program to reduce computational overheads in data processing and storage. This article is part of the theme issue ‘Chemistry without the Born–Oppenheimer approximation’. The Royal Society 2022-05-16 2022-03-28 /pmc/articles/PMC8958277/ /pubmed/35341303 http://dx.doi.org/10.1098/rsta.2020.0382 Text en © 2022 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Articles
Mukherjee, Saikat
Pinheiro, Max
Demoulin, Baptiste
Barbatti, Mario
Simulations of molecular photodynamics in long timescales
title Simulations of molecular photodynamics in long timescales
title_full Simulations of molecular photodynamics in long timescales
title_fullStr Simulations of molecular photodynamics in long timescales
title_full_unstemmed Simulations of molecular photodynamics in long timescales
title_short Simulations of molecular photodynamics in long timescales
title_sort simulations of molecular photodynamics in long timescales
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8958277/
https://www.ncbi.nlm.nih.gov/pubmed/35341303
http://dx.doi.org/10.1098/rsta.2020.0382
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