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Insight into the genome data of commercially important giant kelp Macrocystis pyrifera

Kelps or brown algae are a wide group of marine macroalgae that play an important role in aquatic ecosystems and generally have high commercial value. To facilitate brown algal studies, we report the complete genome sequence of the largest kelp Macrocystis pyrifera. The whole genome is ∼428 Mb in si...

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Autores principales: Paul, Sujay, Salavarría, Erika, García, Katherine, Reyes-Calderón, Alonso, Gil-Kodaka, Patricia, Samolski, Ilanit, Srivastava, Aashish, Bandyopadhyay, Anindya, Villena, Gretty K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8958530/
https://www.ncbi.nlm.nih.gov/pubmed/35356318
http://dx.doi.org/10.1016/j.dib.2022.108068
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author Paul, Sujay
Salavarría, Erika
García, Katherine
Reyes-Calderón, Alonso
Gil-Kodaka, Patricia
Samolski, Ilanit
Srivastava, Aashish
Bandyopadhyay, Anindya
Villena, Gretty K.
author_facet Paul, Sujay
Salavarría, Erika
García, Katherine
Reyes-Calderón, Alonso
Gil-Kodaka, Patricia
Samolski, Ilanit
Srivastava, Aashish
Bandyopadhyay, Anindya
Villena, Gretty K.
author_sort Paul, Sujay
collection PubMed
description Kelps or brown algae are a wide group of marine macroalgae that play an important role in aquatic ecosystems and generally have high commercial value. To facilitate brown algal studies, we report the complete genome sequence of the largest kelp Macrocystis pyrifera. The whole genome is ∼428 Mb in size, comprises 44,307 scaffolds with an average GC content of 47%, and is predicted to contain a total of 24,778 genes. 18S sequence-based phylogenetic analysis revealed that littoral brown seaweed Scytosiphon lomentaria is the closest species of M. pyrifera. Numerous genes identified in this dataset are involved in genetic information processing, signaling, and cellular processes, carbohydrate metabolism, and terpenoids biosynthesis.
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spelling pubmed-89585302022-03-29 Insight into the genome data of commercially important giant kelp Macrocystis pyrifera Paul, Sujay Salavarría, Erika García, Katherine Reyes-Calderón, Alonso Gil-Kodaka, Patricia Samolski, Ilanit Srivastava, Aashish Bandyopadhyay, Anindya Villena, Gretty K. Data Brief Data Article Kelps or brown algae are a wide group of marine macroalgae that play an important role in aquatic ecosystems and generally have high commercial value. To facilitate brown algal studies, we report the complete genome sequence of the largest kelp Macrocystis pyrifera. The whole genome is ∼428 Mb in size, comprises 44,307 scaffolds with an average GC content of 47%, and is predicted to contain a total of 24,778 genes. 18S sequence-based phylogenetic analysis revealed that littoral brown seaweed Scytosiphon lomentaria is the closest species of M. pyrifera. Numerous genes identified in this dataset are involved in genetic information processing, signaling, and cellular processes, carbohydrate metabolism, and terpenoids biosynthesis. Elsevier 2022-03-18 /pmc/articles/PMC8958530/ /pubmed/35356318 http://dx.doi.org/10.1016/j.dib.2022.108068 Text en © 2022 The Author(s). Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Paul, Sujay
Salavarría, Erika
García, Katherine
Reyes-Calderón, Alonso
Gil-Kodaka, Patricia
Samolski, Ilanit
Srivastava, Aashish
Bandyopadhyay, Anindya
Villena, Gretty K.
Insight into the genome data of commercially important giant kelp Macrocystis pyrifera
title Insight into the genome data of commercially important giant kelp Macrocystis pyrifera
title_full Insight into the genome data of commercially important giant kelp Macrocystis pyrifera
title_fullStr Insight into the genome data of commercially important giant kelp Macrocystis pyrifera
title_full_unstemmed Insight into the genome data of commercially important giant kelp Macrocystis pyrifera
title_short Insight into the genome data of commercially important giant kelp Macrocystis pyrifera
title_sort insight into the genome data of commercially important giant kelp macrocystis pyrifera
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8958530/
https://www.ncbi.nlm.nih.gov/pubmed/35356318
http://dx.doi.org/10.1016/j.dib.2022.108068
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