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Insight into the genome data of commercially important giant kelp Macrocystis pyrifera
Kelps or brown algae are a wide group of marine macroalgae that play an important role in aquatic ecosystems and generally have high commercial value. To facilitate brown algal studies, we report the complete genome sequence of the largest kelp Macrocystis pyrifera. The whole genome is ∼428 Mb in si...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8958530/ https://www.ncbi.nlm.nih.gov/pubmed/35356318 http://dx.doi.org/10.1016/j.dib.2022.108068 |
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author | Paul, Sujay Salavarría, Erika García, Katherine Reyes-Calderón, Alonso Gil-Kodaka, Patricia Samolski, Ilanit Srivastava, Aashish Bandyopadhyay, Anindya Villena, Gretty K. |
author_facet | Paul, Sujay Salavarría, Erika García, Katherine Reyes-Calderón, Alonso Gil-Kodaka, Patricia Samolski, Ilanit Srivastava, Aashish Bandyopadhyay, Anindya Villena, Gretty K. |
author_sort | Paul, Sujay |
collection | PubMed |
description | Kelps or brown algae are a wide group of marine macroalgae that play an important role in aquatic ecosystems and generally have high commercial value. To facilitate brown algal studies, we report the complete genome sequence of the largest kelp Macrocystis pyrifera. The whole genome is ∼428 Mb in size, comprises 44,307 scaffolds with an average GC content of 47%, and is predicted to contain a total of 24,778 genes. 18S sequence-based phylogenetic analysis revealed that littoral brown seaweed Scytosiphon lomentaria is the closest species of M. pyrifera. Numerous genes identified in this dataset are involved in genetic information processing, signaling, and cellular processes, carbohydrate metabolism, and terpenoids biosynthesis. |
format | Online Article Text |
id | pubmed-8958530 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-89585302022-03-29 Insight into the genome data of commercially important giant kelp Macrocystis pyrifera Paul, Sujay Salavarría, Erika García, Katherine Reyes-Calderón, Alonso Gil-Kodaka, Patricia Samolski, Ilanit Srivastava, Aashish Bandyopadhyay, Anindya Villena, Gretty K. Data Brief Data Article Kelps or brown algae are a wide group of marine macroalgae that play an important role in aquatic ecosystems and generally have high commercial value. To facilitate brown algal studies, we report the complete genome sequence of the largest kelp Macrocystis pyrifera. The whole genome is ∼428 Mb in size, comprises 44,307 scaffolds with an average GC content of 47%, and is predicted to contain a total of 24,778 genes. 18S sequence-based phylogenetic analysis revealed that littoral brown seaweed Scytosiphon lomentaria is the closest species of M. pyrifera. Numerous genes identified in this dataset are involved in genetic information processing, signaling, and cellular processes, carbohydrate metabolism, and terpenoids biosynthesis. Elsevier 2022-03-18 /pmc/articles/PMC8958530/ /pubmed/35356318 http://dx.doi.org/10.1016/j.dib.2022.108068 Text en © 2022 The Author(s). Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Paul, Sujay Salavarría, Erika García, Katherine Reyes-Calderón, Alonso Gil-Kodaka, Patricia Samolski, Ilanit Srivastava, Aashish Bandyopadhyay, Anindya Villena, Gretty K. Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
title | Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
title_full | Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
title_fullStr | Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
title_full_unstemmed | Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
title_short | Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
title_sort | insight into the genome data of commercially important giant kelp macrocystis pyrifera |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8958530/ https://www.ncbi.nlm.nih.gov/pubmed/35356318 http://dx.doi.org/10.1016/j.dib.2022.108068 |
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