Cargando…

Bioinformatics Analysis Reveals Cell Cycle-Related Gene Upregulation in Ascending Aortic Tissues From Murine Models

Thoracic aortic aneurysm and dissection (TAAD) is a high-risk aortic disease. Mouse models are usually used to explore the pathological progression of TAAD. In our studies, we performed bioinformatics analysis on a microarray dataset (GSE36778) and verified experiments to define the integrated hub g...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Xiaoping, Yang, Zuozhen, Li, Xiaoyan, Liu, Xuxia, Wang, Xipeng, Qiu, Tao, Wang, Yueli, Li, Tongxun, Li, Qingle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8959095/
https://www.ncbi.nlm.nih.gov/pubmed/35356426
http://dx.doi.org/10.3389/fgene.2022.823769
_version_ 1784677074376589312
author Zhang, Xiaoping
Yang, Zuozhen
Li, Xiaoyan
Liu, Xuxia
Wang, Xipeng
Qiu, Tao
Wang, Yueli
Li, Tongxun
Li, Qingle
author_facet Zhang, Xiaoping
Yang, Zuozhen
Li, Xiaoyan
Liu, Xuxia
Wang, Xipeng
Qiu, Tao
Wang, Yueli
Li, Tongxun
Li, Qingle
author_sort Zhang, Xiaoping
collection PubMed
description Thoracic aortic aneurysm and dissection (TAAD) is a high-risk aortic disease. Mouse models are usually used to explore the pathological progression of TAAD. In our studies, we performed bioinformatics analysis on a microarray dataset (GSE36778) and verified experiments to define the integrated hub genes of TAAD in three different mouse models. Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) and protein–protein interaction (PPI) network analyses, and histological and quantitative reverse transcription-PCR (qRT–PCR) experiments were used in our study. First, differentially expressed genes (DEGs) were identified, and twelve common differentially expressed genes were found. Second, genes related to the cell cycle and inflammation were enriched by using GO and PPI. We focused on filtering and validating eighteen hub genes that were upregulated. Then, expression data from human ascending aortic tissues in the GSE153434 dataset were also used to verify our findings. These results indicated that cell cycle-related genes participate in the pathological mechanism of TAAD and provide new insight into the molecular mechanisms of TAAD.
format Online
Article
Text
id pubmed-8959095
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-89590952022-03-29 Bioinformatics Analysis Reveals Cell Cycle-Related Gene Upregulation in Ascending Aortic Tissues From Murine Models Zhang, Xiaoping Yang, Zuozhen Li, Xiaoyan Liu, Xuxia Wang, Xipeng Qiu, Tao Wang, Yueli Li, Tongxun Li, Qingle Front Genet Genetics Thoracic aortic aneurysm and dissection (TAAD) is a high-risk aortic disease. Mouse models are usually used to explore the pathological progression of TAAD. In our studies, we performed bioinformatics analysis on a microarray dataset (GSE36778) and verified experiments to define the integrated hub genes of TAAD in three different mouse models. Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) and protein–protein interaction (PPI) network analyses, and histological and quantitative reverse transcription-PCR (qRT–PCR) experiments were used in our study. First, differentially expressed genes (DEGs) were identified, and twelve common differentially expressed genes were found. Second, genes related to the cell cycle and inflammation were enriched by using GO and PPI. We focused on filtering and validating eighteen hub genes that were upregulated. Then, expression data from human ascending aortic tissues in the GSE153434 dataset were also used to verify our findings. These results indicated that cell cycle-related genes participate in the pathological mechanism of TAAD and provide new insight into the molecular mechanisms of TAAD. Frontiers Media S.A. 2022-03-08 /pmc/articles/PMC8959095/ /pubmed/35356426 http://dx.doi.org/10.3389/fgene.2022.823769 Text en Copyright © 2022 Zhang, Yang, Li, Liu, Wang, Qiu, Wang, Li and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zhang, Xiaoping
Yang, Zuozhen
Li, Xiaoyan
Liu, Xuxia
Wang, Xipeng
Qiu, Tao
Wang, Yueli
Li, Tongxun
Li, Qingle
Bioinformatics Analysis Reveals Cell Cycle-Related Gene Upregulation in Ascending Aortic Tissues From Murine Models
title Bioinformatics Analysis Reveals Cell Cycle-Related Gene Upregulation in Ascending Aortic Tissues From Murine Models
title_full Bioinformatics Analysis Reveals Cell Cycle-Related Gene Upregulation in Ascending Aortic Tissues From Murine Models
title_fullStr Bioinformatics Analysis Reveals Cell Cycle-Related Gene Upregulation in Ascending Aortic Tissues From Murine Models
title_full_unstemmed Bioinformatics Analysis Reveals Cell Cycle-Related Gene Upregulation in Ascending Aortic Tissues From Murine Models
title_short Bioinformatics Analysis Reveals Cell Cycle-Related Gene Upregulation in Ascending Aortic Tissues From Murine Models
title_sort bioinformatics analysis reveals cell cycle-related gene upregulation in ascending aortic tissues from murine models
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8959095/
https://www.ncbi.nlm.nih.gov/pubmed/35356426
http://dx.doi.org/10.3389/fgene.2022.823769
work_keys_str_mv AT zhangxiaoping bioinformaticsanalysisrevealscellcyclerelatedgeneupregulationinascendingaortictissuesfrommurinemodels
AT yangzuozhen bioinformaticsanalysisrevealscellcyclerelatedgeneupregulationinascendingaortictissuesfrommurinemodels
AT lixiaoyan bioinformaticsanalysisrevealscellcyclerelatedgeneupregulationinascendingaortictissuesfrommurinemodels
AT liuxuxia bioinformaticsanalysisrevealscellcyclerelatedgeneupregulationinascendingaortictissuesfrommurinemodels
AT wangxipeng bioinformaticsanalysisrevealscellcyclerelatedgeneupregulationinascendingaortictissuesfrommurinemodels
AT qiutao bioinformaticsanalysisrevealscellcyclerelatedgeneupregulationinascendingaortictissuesfrommurinemodels
AT wangyueli bioinformaticsanalysisrevealscellcyclerelatedgeneupregulationinascendingaortictissuesfrommurinemodels
AT litongxun bioinformaticsanalysisrevealscellcyclerelatedgeneupregulationinascendingaortictissuesfrommurinemodels
AT liqingle bioinformaticsanalysisrevealscellcyclerelatedgeneupregulationinascendingaortictissuesfrommurinemodels