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Addressing Dynamics at Catalytic Heterogeneous Interfaces with DFT-MD: Anomalous Temperature Distributions from Commonly Used Thermostats
[Image: see text] Density functional theory-based molecular dynamics (DFT-MD) has been widely used for studying the chemistry of heterogeneous interfacial systems under operational conditions. We report frequently overlooked errors in thermostated or constant-temperature DFT-MD simulations applied t...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8959310/ https://www.ncbi.nlm.nih.gov/pubmed/35297635 http://dx.doi.org/10.1021/acs.jpclett.2c00230 |
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author | Korpelin, Ville Kiljunen, Toni Melander, Marko M. Caro, Miguel A. Kristoffersen, Henrik H. Mammen, Nisha Apaja, Vesa Honkala, Karoliina |
author_facet | Korpelin, Ville Kiljunen, Toni Melander, Marko M. Caro, Miguel A. Kristoffersen, Henrik H. Mammen, Nisha Apaja, Vesa Honkala, Karoliina |
author_sort | Korpelin, Ville |
collection | PubMed |
description | [Image: see text] Density functional theory-based molecular dynamics (DFT-MD) has been widely used for studying the chemistry of heterogeneous interfacial systems under operational conditions. We report frequently overlooked errors in thermostated or constant-temperature DFT-MD simulations applied to study (electro)catalytic chemistry. Our results demonstrate that commonly used thermostats such as Nosé–Hoover, Berendsen, and simple velocity-rescaling methods fail to provide a reliable temperature description for systems considered. Instead, nonconstant temperatures and large temperature gradients within the different parts of the system are observed. The errors are not a “feature” of any particular code but are present in several ab initio molecular dynamics implementations. This uneven temperature distribution, due to inadequate thermostatting, is well-known in the classical MD community, where it is ascribed to the failure in kinetic energy equipartition among different degrees of freedom in heterogeneous systems (Harvey et al. J. Comput. Chem.1998, 726−740) and termed the flying ice cube effect. We provide tantamount evidence that interfacial systems are susceptible to substantial flying ice cube effects and demonstrate that the traditional Nosé–Hoover and Berendsen thermostats should be applied with care when simulating, for example, catalytic properties or structures of solvated interfaces and supported clusters. We conclude that the flying ice cube effect in these systems can be conveniently avoided using Langevin dynamics. |
format | Online Article Text |
id | pubmed-8959310 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-89593102022-03-29 Addressing Dynamics at Catalytic Heterogeneous Interfaces with DFT-MD: Anomalous Temperature Distributions from Commonly Used Thermostats Korpelin, Ville Kiljunen, Toni Melander, Marko M. Caro, Miguel A. Kristoffersen, Henrik H. Mammen, Nisha Apaja, Vesa Honkala, Karoliina J Phys Chem Lett [Image: see text] Density functional theory-based molecular dynamics (DFT-MD) has been widely used for studying the chemistry of heterogeneous interfacial systems under operational conditions. We report frequently overlooked errors in thermostated or constant-temperature DFT-MD simulations applied to study (electro)catalytic chemistry. Our results demonstrate that commonly used thermostats such as Nosé–Hoover, Berendsen, and simple velocity-rescaling methods fail to provide a reliable temperature description for systems considered. Instead, nonconstant temperatures and large temperature gradients within the different parts of the system are observed. The errors are not a “feature” of any particular code but are present in several ab initio molecular dynamics implementations. This uneven temperature distribution, due to inadequate thermostatting, is well-known in the classical MD community, where it is ascribed to the failure in kinetic energy equipartition among different degrees of freedom in heterogeneous systems (Harvey et al. J. Comput. Chem.1998, 726−740) and termed the flying ice cube effect. We provide tantamount evidence that interfacial systems are susceptible to substantial flying ice cube effects and demonstrate that the traditional Nosé–Hoover and Berendsen thermostats should be applied with care when simulating, for example, catalytic properties or structures of solvated interfaces and supported clusters. We conclude that the flying ice cube effect in these systems can be conveniently avoided using Langevin dynamics. American Chemical Society 2022-03-17 2022-03-24 /pmc/articles/PMC8959310/ /pubmed/35297635 http://dx.doi.org/10.1021/acs.jpclett.2c00230 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Korpelin, Ville Kiljunen, Toni Melander, Marko M. Caro, Miguel A. Kristoffersen, Henrik H. Mammen, Nisha Apaja, Vesa Honkala, Karoliina Addressing Dynamics at Catalytic Heterogeneous Interfaces with DFT-MD: Anomalous Temperature Distributions from Commonly Used Thermostats |
title | Addressing Dynamics at Catalytic Heterogeneous Interfaces
with DFT-MD: Anomalous Temperature Distributions from Commonly Used
Thermostats |
title_full | Addressing Dynamics at Catalytic Heterogeneous Interfaces
with DFT-MD: Anomalous Temperature Distributions from Commonly Used
Thermostats |
title_fullStr | Addressing Dynamics at Catalytic Heterogeneous Interfaces
with DFT-MD: Anomalous Temperature Distributions from Commonly Used
Thermostats |
title_full_unstemmed | Addressing Dynamics at Catalytic Heterogeneous Interfaces
with DFT-MD: Anomalous Temperature Distributions from Commonly Used
Thermostats |
title_short | Addressing Dynamics at Catalytic Heterogeneous Interfaces
with DFT-MD: Anomalous Temperature Distributions from Commonly Used
Thermostats |
title_sort | addressing dynamics at catalytic heterogeneous interfaces
with dft-md: anomalous temperature distributions from commonly used
thermostats |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8959310/ https://www.ncbi.nlm.nih.gov/pubmed/35297635 http://dx.doi.org/10.1021/acs.jpclett.2c00230 |
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