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Characterization of the complete chloroplast genome of Lonicera tangutica (Caprifoliaceae), an ornamental and medicinal plant in China

In the present study, the complete chloroplast genome of Lonicera tangutica is presented and characterized for the first time. The complete chloroplast genome was 156,121 bp in length, including 23,899 bp inverted repeat (IR) regions, an 89,466 bp large single-copy (LSC) region, and an 18,851 bp sma...

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Autores principales: Wang, Xiaoyu, He, Jing, Su, Xueping, Xu, Bixiang, Liu, Yan, Tang, Yanhong, Sun, Shengnan, Li, Ping, Zhao, Chengzhou
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8959524/
https://www.ncbi.nlm.nih.gov/pubmed/35356789
http://dx.doi.org/10.1080/23802359.2022.2054376
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author Wang, Xiaoyu
He, Jing
Su, Xueping
Xu, Bixiang
Liu, Yan
Tang, Yanhong
Sun, Shengnan
Li, Ping
Zhao, Chengzhou
author_facet Wang, Xiaoyu
He, Jing
Su, Xueping
Xu, Bixiang
Liu, Yan
Tang, Yanhong
Sun, Shengnan
Li, Ping
Zhao, Chengzhou
author_sort Wang, Xiaoyu
collection PubMed
description In the present study, the complete chloroplast genome of Lonicera tangutica is presented and characterized for the first time. The complete chloroplast genome was 156,121 bp in length, including 23,899 bp inverted repeat (IR) regions, an 89,466 bp large single-copy (LSC) region, and an 18,851 bp small single-copy (SSC) region. A total of 129 genes, including 37 tRNA genes, eight rRNA genes, and 84 protein-coding genes, were annotated, and the overall GC content of the chloroplast genome was 38.35%. Two introns in the ycf3 gene and a single intron in another gene were detected. Maximum-likelihood phylogenetic analysis indicated that L. tangutica has a very close evolutionary relationship with Lonicera praeflorens, Lonicera hispida, Lonicera fragrantissima, and Lonicera stephanocarpa. These results are valuable for studying the evolution and genetic diversity of L. tangutica.
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spelling pubmed-89595242022-03-29 Characterization of the complete chloroplast genome of Lonicera tangutica (Caprifoliaceae), an ornamental and medicinal plant in China Wang, Xiaoyu He, Jing Su, Xueping Xu, Bixiang Liu, Yan Tang, Yanhong Sun, Shengnan Li, Ping Zhao, Chengzhou Mitochondrial DNA B Resour Mitogenome Announcement In the present study, the complete chloroplast genome of Lonicera tangutica is presented and characterized for the first time. The complete chloroplast genome was 156,121 bp in length, including 23,899 bp inverted repeat (IR) regions, an 89,466 bp large single-copy (LSC) region, and an 18,851 bp small single-copy (SSC) region. A total of 129 genes, including 37 tRNA genes, eight rRNA genes, and 84 protein-coding genes, were annotated, and the overall GC content of the chloroplast genome was 38.35%. Two introns in the ycf3 gene and a single intron in another gene were detected. Maximum-likelihood phylogenetic analysis indicated that L. tangutica has a very close evolutionary relationship with Lonicera praeflorens, Lonicera hispida, Lonicera fragrantissima, and Lonicera stephanocarpa. These results are valuable for studying the evolution and genetic diversity of L. tangutica. Taylor & Francis 2022-03-28 /pmc/articles/PMC8959524/ /pubmed/35356789 http://dx.doi.org/10.1080/23802359.2022.2054376 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Xiaoyu
He, Jing
Su, Xueping
Xu, Bixiang
Liu, Yan
Tang, Yanhong
Sun, Shengnan
Li, Ping
Zhao, Chengzhou
Characterization of the complete chloroplast genome of Lonicera tangutica (Caprifoliaceae), an ornamental and medicinal plant in China
title Characterization of the complete chloroplast genome of Lonicera tangutica (Caprifoliaceae), an ornamental and medicinal plant in China
title_full Characterization of the complete chloroplast genome of Lonicera tangutica (Caprifoliaceae), an ornamental and medicinal plant in China
title_fullStr Characterization of the complete chloroplast genome of Lonicera tangutica (Caprifoliaceae), an ornamental and medicinal plant in China
title_full_unstemmed Characterization of the complete chloroplast genome of Lonicera tangutica (Caprifoliaceae), an ornamental and medicinal plant in China
title_short Characterization of the complete chloroplast genome of Lonicera tangutica (Caprifoliaceae), an ornamental and medicinal plant in China
title_sort characterization of the complete chloroplast genome of lonicera tangutica (caprifoliaceae), an ornamental and medicinal plant in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8959524/
https://www.ncbi.nlm.nih.gov/pubmed/35356789
http://dx.doi.org/10.1080/23802359.2022.2054376
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