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Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals

Lung adenocarcinoma (LUAD) is the most common histological subtype of lung cancer with heterogeneous outcomes and diverse therapeutic responses. However, the understanding of the potential mechanism behind LUAD initiation and progression remains limited. Increasing evidence shows the clinical signif...

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Autores principales: Lou, Yuqing, Shi, Qin, Zhang, Yanwei, Qi, Ying, Zhang, Wei, Wang, Huimin, Lu, Jun, Han, Baohui, Zhong, Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8960258/
https://www.ncbi.nlm.nih.gov/pubmed/35359451
http://dx.doi.org/10.3389/fcell.2022.840466
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author Lou, Yuqing
Shi, Qin
Zhang, Yanwei
Qi, Ying
Zhang, Wei
Wang, Huimin
Lu, Jun
Han, Baohui
Zhong, Hua
author_facet Lou, Yuqing
Shi, Qin
Zhang, Yanwei
Qi, Ying
Zhang, Wei
Wang, Huimin
Lu, Jun
Han, Baohui
Zhong, Hua
author_sort Lou, Yuqing
collection PubMed
description Lung adenocarcinoma (LUAD) is the most common histological subtype of lung cancer with heterogeneous outcomes and diverse therapeutic responses. However, the understanding of the potential mechanism behind LUAD initiation and progression remains limited. Increasing evidence shows the clinical significance of the interaction between immune and hypoxia in tumor microenvironment. To mine reliable prognostic signatures related to both immune and hypoxia and provide a more comprehensive landscape of the hypoxia-immune genome map, we investigated the hypoxia-immune-related alteration at the multi-omics level (gene expression, somatic mutation, and DNA methylation). Multiple strategies including lasso regression and multivariate Cox proportional hazards regression were used to screen the signatures with clinical significance and establish an incorporated prognosis prediction model with robust discriminative power on survival status on both the training and test datasets. Finally, combing all the samples, we constructed a robust model comprising 19 signatures for the prognosis prediction of LUAD patients. The results of our study provide a comprehensive landscape of hypoxia-immune related genetic alterations and provide a robust prognosis predictor for LUAD patients.
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spelling pubmed-89602582022-03-30 Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals Lou, Yuqing Shi, Qin Zhang, Yanwei Qi, Ying Zhang, Wei Wang, Huimin Lu, Jun Han, Baohui Zhong, Hua Front Cell Dev Biol Cell and Developmental Biology Lung adenocarcinoma (LUAD) is the most common histological subtype of lung cancer with heterogeneous outcomes and diverse therapeutic responses. However, the understanding of the potential mechanism behind LUAD initiation and progression remains limited. Increasing evidence shows the clinical significance of the interaction between immune and hypoxia in tumor microenvironment. To mine reliable prognostic signatures related to both immune and hypoxia and provide a more comprehensive landscape of the hypoxia-immune genome map, we investigated the hypoxia-immune-related alteration at the multi-omics level (gene expression, somatic mutation, and DNA methylation). Multiple strategies including lasso regression and multivariate Cox proportional hazards regression were used to screen the signatures with clinical significance and establish an incorporated prognosis prediction model with robust discriminative power on survival status on both the training and test datasets. Finally, combing all the samples, we constructed a robust model comprising 19 signatures for the prognosis prediction of LUAD patients. The results of our study provide a comprehensive landscape of hypoxia-immune related genetic alterations and provide a robust prognosis predictor for LUAD patients. Frontiers Media S.A. 2022-03-10 /pmc/articles/PMC8960258/ /pubmed/35359451 http://dx.doi.org/10.3389/fcell.2022.840466 Text en Copyright © 2022 Lou, Shi, Zhang, Qi, Zhang, Wang, Lu, Han and Zhong. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Lou, Yuqing
Shi, Qin
Zhang, Yanwei
Qi, Ying
Zhang, Wei
Wang, Huimin
Lu, Jun
Han, Baohui
Zhong, Hua
Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals
title Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals
title_full Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals
title_fullStr Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals
title_full_unstemmed Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals
title_short Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals
title_sort multi-omics signatures identification for luad prognosis prediction model based on the integrative analysis of immune and hypoxia signals
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8960258/
https://www.ncbi.nlm.nih.gov/pubmed/35359451
http://dx.doi.org/10.3389/fcell.2022.840466
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