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Is There Any Mosaicism in REarranged During Transfection Variant in Hirschsprung Disease’s Patients?
BACKGROUND: Hirschsprung disease (HSCR) is a heterogeneous genetic disease characterized by the absence of ganglion cells in the intestinal tract. The REarranged during Transfection (RET) is the most responsible gene for its pathogenesis. RET’s somatic mosaicisms have been reported for HSCR; however...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8960445/ https://www.ncbi.nlm.nih.gov/pubmed/35359901 http://dx.doi.org/10.3389/fped.2022.842820 |
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author | Iskandar, Kristy Simanjaya, Susan Indrawan, Taufik Kalim, Alvin Santoso Marcellus, Heriyanto, Didik Setyo Gunadi, |
author_facet | Iskandar, Kristy Simanjaya, Susan Indrawan, Taufik Kalim, Alvin Santoso Marcellus, Heriyanto, Didik Setyo Gunadi, |
author_sort | Iskandar, Kristy |
collection | PubMed |
description | BACKGROUND: Hirschsprung disease (HSCR) is a heterogeneous genetic disease characterized by the absence of ganglion cells in the intestinal tract. The REarranged during Transfection (RET) is the most responsible gene for its pathogenesis. RET’s somatic mosaicisms have been reported for HSCR; however, they are still under-recognized. Therefore, we determined the frequency of somatic mutation of RET rs2435357 in HSCR patients at our institution. METHODS: We performed RET rs2435357 genotyping from 73 HSCR formalin-fixed and paraffin-embedded (FFPE) rectal and 60 non-HSCR controls using the PCR-RFLP method. Subsequently, we compared those frequencies of genotypes for RET rs2435357 with our previous genotyping data from 93 HSCR blood specimens. RESULTS: The frequencies of genotypes for RET rs2435357 in HSCR paraffin-embedded rectal were CC 0, CT 11 (15%), and TT 62 (85%), whereas their frequencies in HSCR blood samples were CC 4 (4.3%), CT 22 (23.7%), and TT 67 (72%). Those frequencies differences almost reached a significant level (p = 0.06). Moreover, the frequency of RET rs2435357 risk allele (T) was significantly higher in HSCR patients (135/146, 92.5%) than controls (46/120, 38.3%) (p = 3.4 × 10(–22)), with an odds ratio of 19.74 (95% confidence interval = 9.65–40.41). CONCLUSION: Our study suggests somatic mosaicism in HSCR patients. These findings further imply the complexity of the pathogenesis of HSCR. Moreover, our study confirms the RET rs2435357 as a significant genetic risk factor for HSCR patients. |
format | Online Article Text |
id | pubmed-8960445 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89604452022-03-30 Is There Any Mosaicism in REarranged During Transfection Variant in Hirschsprung Disease’s Patients? Iskandar, Kristy Simanjaya, Susan Indrawan, Taufik Kalim, Alvin Santoso Marcellus, Heriyanto, Didik Setyo Gunadi, Front Pediatr Pediatrics BACKGROUND: Hirschsprung disease (HSCR) is a heterogeneous genetic disease characterized by the absence of ganglion cells in the intestinal tract. The REarranged during Transfection (RET) is the most responsible gene for its pathogenesis. RET’s somatic mosaicisms have been reported for HSCR; however, they are still under-recognized. Therefore, we determined the frequency of somatic mutation of RET rs2435357 in HSCR patients at our institution. METHODS: We performed RET rs2435357 genotyping from 73 HSCR formalin-fixed and paraffin-embedded (FFPE) rectal and 60 non-HSCR controls using the PCR-RFLP method. Subsequently, we compared those frequencies of genotypes for RET rs2435357 with our previous genotyping data from 93 HSCR blood specimens. RESULTS: The frequencies of genotypes for RET rs2435357 in HSCR paraffin-embedded rectal were CC 0, CT 11 (15%), and TT 62 (85%), whereas their frequencies in HSCR blood samples were CC 4 (4.3%), CT 22 (23.7%), and TT 67 (72%). Those frequencies differences almost reached a significant level (p = 0.06). Moreover, the frequency of RET rs2435357 risk allele (T) was significantly higher in HSCR patients (135/146, 92.5%) than controls (46/120, 38.3%) (p = 3.4 × 10(–22)), with an odds ratio of 19.74 (95% confidence interval = 9.65–40.41). CONCLUSION: Our study suggests somatic mosaicism in HSCR patients. These findings further imply the complexity of the pathogenesis of HSCR. Moreover, our study confirms the RET rs2435357 as a significant genetic risk factor for HSCR patients. Frontiers Media S.A. 2022-03-10 /pmc/articles/PMC8960445/ /pubmed/35359901 http://dx.doi.org/10.3389/fped.2022.842820 Text en Copyright © 2022 Iskandar, Simanjaya, Indrawan, Kalim, Marcellus, Heriyanto and Gunadi. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Pediatrics Iskandar, Kristy Simanjaya, Susan Indrawan, Taufik Kalim, Alvin Santoso Marcellus, Heriyanto, Didik Setyo Gunadi, Is There Any Mosaicism in REarranged During Transfection Variant in Hirschsprung Disease’s Patients? |
title | Is There Any Mosaicism in REarranged During Transfection Variant in Hirschsprung Disease’s Patients? |
title_full | Is There Any Mosaicism in REarranged During Transfection Variant in Hirschsprung Disease’s Patients? |
title_fullStr | Is There Any Mosaicism in REarranged During Transfection Variant in Hirschsprung Disease’s Patients? |
title_full_unstemmed | Is There Any Mosaicism in REarranged During Transfection Variant in Hirschsprung Disease’s Patients? |
title_short | Is There Any Mosaicism in REarranged During Transfection Variant in Hirschsprung Disease’s Patients? |
title_sort | is there any mosaicism in rearranged during transfection variant in hirschsprung disease’s patients? |
topic | Pediatrics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8960445/ https://www.ncbi.nlm.nih.gov/pubmed/35359901 http://dx.doi.org/10.3389/fped.2022.842820 |
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