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Statistical reproducibility for pairwise t-tests in pharmaceutical research
This paper investigates statistical reproducibility of the [Formula: see text] -test. We formulate reproducibility as a predictive inference problem and apply the nonparametric predictive inference method. Within our research framework, statistical reproducibility provides inference on the probabili...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8961255/ https://www.ncbi.nlm.nih.gov/pubmed/34855537 http://dx.doi.org/10.1177/09622802211041765 |
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author | Simkus, Andrea Coolen, Frank PA Coolen-Maturi, Tahani Karp, Natasha A Bendtsen, Claus |
author_facet | Simkus, Andrea Coolen, Frank PA Coolen-Maturi, Tahani Karp, Natasha A Bendtsen, Claus |
author_sort | Simkus, Andrea |
collection | PubMed |
description | This paper investigates statistical reproducibility of the [Formula: see text] -test. We formulate reproducibility as a predictive inference problem and apply the nonparametric predictive inference method. Within our research framework, statistical reproducibility provides inference on the probability that the same test outcome would be reached, if the test were repeated under identical conditions. We present an nonparametric predictive inference algorithm to calculate the reproducibility of the [Formula: see text] -test and then use simulations to explore the reproducibility both under the null and alternative hypotheses. We then apply nonparametric predictive inference reproducibility to a real-life scenario of a preclinical experiment, which involves multiple pairwise comparisons of test groups, where different groups are given a different concentration of a drug. The aim of the experiment is to decide the concentration of the drug which is most effective. In both simulations and the application scenario, we study the relationship between reproducibility and two test statistics, the Cohen’s [Formula: see text] and the [Formula: see text] -value. We also compare the reproducibility of the [Formula: see text] -test with the reproducibility of the Wilcoxon Mann–Whitney test. Finally, we examine reproducibility for the final decision of choosing a particular dose in the multiple pairwise comparisons scenario. This paper presents advances on the topic of test reproducibility with relevance for tests used in pharmaceutical research. |
format | Online Article Text |
id | pubmed-8961255 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-89612552022-03-30 Statistical reproducibility for pairwise t-tests in pharmaceutical research Simkus, Andrea Coolen, Frank PA Coolen-Maturi, Tahani Karp, Natasha A Bendtsen, Claus Stat Methods Med Res Original Research Articles This paper investigates statistical reproducibility of the [Formula: see text] -test. We formulate reproducibility as a predictive inference problem and apply the nonparametric predictive inference method. Within our research framework, statistical reproducibility provides inference on the probability that the same test outcome would be reached, if the test were repeated under identical conditions. We present an nonparametric predictive inference algorithm to calculate the reproducibility of the [Formula: see text] -test and then use simulations to explore the reproducibility both under the null and alternative hypotheses. We then apply nonparametric predictive inference reproducibility to a real-life scenario of a preclinical experiment, which involves multiple pairwise comparisons of test groups, where different groups are given a different concentration of a drug. The aim of the experiment is to decide the concentration of the drug which is most effective. In both simulations and the application scenario, we study the relationship between reproducibility and two test statistics, the Cohen’s [Formula: see text] and the [Formula: see text] -value. We also compare the reproducibility of the [Formula: see text] -test with the reproducibility of the Wilcoxon Mann–Whitney test. Finally, we examine reproducibility for the final decision of choosing a particular dose in the multiple pairwise comparisons scenario. This paper presents advances on the topic of test reproducibility with relevance for tests used in pharmaceutical research. SAGE Publications 2021-12-02 2022-04 /pmc/articles/PMC8961255/ /pubmed/34855537 http://dx.doi.org/10.1177/09622802211041765 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution 4.0 License (https://creativecommons.org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Original Research Articles Simkus, Andrea Coolen, Frank PA Coolen-Maturi, Tahani Karp, Natasha A Bendtsen, Claus Statistical reproducibility for pairwise t-tests in pharmaceutical research |
title | Statistical reproducibility for pairwise t-tests in
pharmaceutical research |
title_full | Statistical reproducibility for pairwise t-tests in
pharmaceutical research |
title_fullStr | Statistical reproducibility for pairwise t-tests in
pharmaceutical research |
title_full_unstemmed | Statistical reproducibility for pairwise t-tests in
pharmaceutical research |
title_short | Statistical reproducibility for pairwise t-tests in
pharmaceutical research |
title_sort | statistical reproducibility for pairwise t-tests in
pharmaceutical research |
topic | Original Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8961255/ https://www.ncbi.nlm.nih.gov/pubmed/34855537 http://dx.doi.org/10.1177/09622802211041765 |
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