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Transcriptome resequencing data for rock pigeon (Columba livia)

OBJECTIVE: How do birds navigate their way? It is one of the interesting question about homing pigeons, however the genetic of navigation has reminded as a puzzle. Optic lobe, olfactory bulb, hippocampus and cere were collected for RNA sampling. The generated RNA-seq represent RNA resequencing data...

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Autores principales: Kharrati-Koopaee, Hamed, Esmailizadeh, Ali, Sabahi, Fatemeh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8961952/
https://www.ncbi.nlm.nih.gov/pubmed/35351186
http://dx.doi.org/10.1186/s13104-022-06007-1
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author Kharrati-Koopaee, Hamed
Esmailizadeh, Ali
Sabahi, Fatemeh
author_facet Kharrati-Koopaee, Hamed
Esmailizadeh, Ali
Sabahi, Fatemeh
author_sort Kharrati-Koopaee, Hamed
collection PubMed
description OBJECTIVE: How do birds navigate their way? It is one of the interesting question about homing pigeons, however the genetic of navigation has reminded as a puzzle. Optic lobe, olfactory bulb, hippocampus and cere were collected for RNA sampling. The generated RNA-seq represent RNA resequencing data for racing homer (homing) pigeon and other rock pigeon breeds. The obtained data set can provide new insight about hippocampus role and GSR contribution to pigeon magnetoreception. DATA DESCRIPTION: To investigate the navigation ability of rock pigeon breeds, 60 whole transcriptome sequence data sets related to homing pigeon, Shiraz tumblers, feral pigeons and Persian high flyers were obtained. RNA extraction was performed from three brain regions (optic lobe, olfactory bulb, hippocampus) and cere. Paired-end 150 bp short reads (Library size 350 bp) were sequenced by Illumina Hiseq 2000. In this way, about 342.1 Gbp and 130.3 Gb data were provided. The whole transcriptome data sets have been deposited at the NCBI SRA database (PRJNA532674). The submitted data set may play critical role to describe the mechanism of navigation ability of rock pigeon breeds.
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spelling pubmed-89619522022-03-30 Transcriptome resequencing data for rock pigeon (Columba livia) Kharrati-Koopaee, Hamed Esmailizadeh, Ali Sabahi, Fatemeh BMC Res Notes Data Note OBJECTIVE: How do birds navigate their way? It is one of the interesting question about homing pigeons, however the genetic of navigation has reminded as a puzzle. Optic lobe, olfactory bulb, hippocampus and cere were collected for RNA sampling. The generated RNA-seq represent RNA resequencing data for racing homer (homing) pigeon and other rock pigeon breeds. The obtained data set can provide new insight about hippocampus role and GSR contribution to pigeon magnetoreception. DATA DESCRIPTION: To investigate the navigation ability of rock pigeon breeds, 60 whole transcriptome sequence data sets related to homing pigeon, Shiraz tumblers, feral pigeons and Persian high flyers were obtained. RNA extraction was performed from three brain regions (optic lobe, olfactory bulb, hippocampus) and cere. Paired-end 150 bp short reads (Library size 350 bp) were sequenced by Illumina Hiseq 2000. In this way, about 342.1 Gbp and 130.3 Gb data were provided. The whole transcriptome data sets have been deposited at the NCBI SRA database (PRJNA532674). The submitted data set may play critical role to describe the mechanism of navigation ability of rock pigeon breeds. BioMed Central 2022-03-29 /pmc/articles/PMC8961952/ /pubmed/35351186 http://dx.doi.org/10.1186/s13104-022-06007-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Kharrati-Koopaee, Hamed
Esmailizadeh, Ali
Sabahi, Fatemeh
Transcriptome resequencing data for rock pigeon (Columba livia)
title Transcriptome resequencing data for rock pigeon (Columba livia)
title_full Transcriptome resequencing data for rock pigeon (Columba livia)
title_fullStr Transcriptome resequencing data for rock pigeon (Columba livia)
title_full_unstemmed Transcriptome resequencing data for rock pigeon (Columba livia)
title_short Transcriptome resequencing data for rock pigeon (Columba livia)
title_sort transcriptome resequencing data for rock pigeon (columba livia)
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8961952/
https://www.ncbi.nlm.nih.gov/pubmed/35351186
http://dx.doi.org/10.1186/s13104-022-06007-1
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