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Metadta: a Stata command for meta-analysis and meta-regression of diagnostic test accuracy data – a tutorial
BACKGROUND: Although statistical procedures for pooling of several epidemiological metrics are generally available in statistical packages, those for meta-analysis of diagnostic test accuracy studies including options for multivariate regression are lacking. Fitting regression models and the process...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8962039/ https://www.ncbi.nlm.nih.gov/pubmed/35351195 http://dx.doi.org/10.1186/s13690-021-00747-5 |
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author | Nyaga, Victoria Nyawira Arbyn, Marc |
author_facet | Nyaga, Victoria Nyawira Arbyn, Marc |
author_sort | Nyaga, Victoria Nyawira |
collection | PubMed |
description | BACKGROUND: Although statistical procedures for pooling of several epidemiological metrics are generally available in statistical packages, those for meta-analysis of diagnostic test accuracy studies including options for multivariate regression are lacking. Fitting regression models and the processing of the estimates often entails lengthy and tedious calculations. Therefore, packaging appropriate statistical procedures in a robust and user-friendly program is of great interest to the scientific community. METHODS: metadta is a statistical program for pooling of diagnostic accuracy test data in Stata. It implements both the bivariate random-effects and the fixed-effects model, allows for meta-regression, and presents the results in tables, a forest plot and/or summary receiver operating characteristic (SROC) plot. For a model without covariates, it quantifies the unexplained heterogeneity due to between-study variation using an I(2) statistic that accounts for the mean-variance relationship and the correlation between sensitivity and specificity. To demonstrate metadta, we applied the program on two published meta-analyses on: 1) the sensitivity and specificity of cytology and other markers including telomerase for primary diagnosis of bladder cancer, and 2) the accuracy of human papillomavirus (HPV) testing on self-collected versus clinician-collected samples to detect cervical precancer. RESULTS: Without requiring a continuity correction, the pooled sensitivity and specificity generated by metadta of telomerase for the diagnosis of primary bladder cancer was 0.77 [95% CI, 0.70, 0.82] and 0.91 [95% CI, 0.75, 0.97] respectively. Metadta also allowed to assess the relative accuracy of HPV testing on self- versus clinician-taken specimens using data from comparative studies conducted in different clinical settings. The analysis showed that HPV testing with target-amplification assays on self-samples was as sensitive as on clinician-samples in detecting cervical pre-cancer irrespective of the clinical setting. CONCLUSION: The metadta program implements state of art statistical procedures in an attempt to close the gap between methodological statisticians and systematic reviewers. We expect the program to popularize the use of appropriate statistical methods for diagnostic meta-analysis further. |
format | Online Article Text |
id | pubmed-8962039 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-89620392022-03-30 Metadta: a Stata command for meta-analysis and meta-regression of diagnostic test accuracy data – a tutorial Nyaga, Victoria Nyawira Arbyn, Marc Arch Public Health Methodology BACKGROUND: Although statistical procedures for pooling of several epidemiological metrics are generally available in statistical packages, those for meta-analysis of diagnostic test accuracy studies including options for multivariate regression are lacking. Fitting regression models and the processing of the estimates often entails lengthy and tedious calculations. Therefore, packaging appropriate statistical procedures in a robust and user-friendly program is of great interest to the scientific community. METHODS: metadta is a statistical program for pooling of diagnostic accuracy test data in Stata. It implements both the bivariate random-effects and the fixed-effects model, allows for meta-regression, and presents the results in tables, a forest plot and/or summary receiver operating characteristic (SROC) plot. For a model without covariates, it quantifies the unexplained heterogeneity due to between-study variation using an I(2) statistic that accounts for the mean-variance relationship and the correlation between sensitivity and specificity. To demonstrate metadta, we applied the program on two published meta-analyses on: 1) the sensitivity and specificity of cytology and other markers including telomerase for primary diagnosis of bladder cancer, and 2) the accuracy of human papillomavirus (HPV) testing on self-collected versus clinician-collected samples to detect cervical precancer. RESULTS: Without requiring a continuity correction, the pooled sensitivity and specificity generated by metadta of telomerase for the diagnosis of primary bladder cancer was 0.77 [95% CI, 0.70, 0.82] and 0.91 [95% CI, 0.75, 0.97] respectively. Metadta also allowed to assess the relative accuracy of HPV testing on self- versus clinician-taken specimens using data from comparative studies conducted in different clinical settings. The analysis showed that HPV testing with target-amplification assays on self-samples was as sensitive as on clinician-samples in detecting cervical pre-cancer irrespective of the clinical setting. CONCLUSION: The metadta program implements state of art statistical procedures in an attempt to close the gap between methodological statisticians and systematic reviewers. We expect the program to popularize the use of appropriate statistical methods for diagnostic meta-analysis further. BioMed Central 2022-03-29 /pmc/articles/PMC8962039/ /pubmed/35351195 http://dx.doi.org/10.1186/s13690-021-00747-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Methodology Nyaga, Victoria Nyawira Arbyn, Marc Metadta: a Stata command for meta-analysis and meta-regression of diagnostic test accuracy data – a tutorial |
title | Metadta: a Stata command for meta-analysis and meta-regression of diagnostic test accuracy data – a tutorial |
title_full | Metadta: a Stata command for meta-analysis and meta-regression of diagnostic test accuracy data – a tutorial |
title_fullStr | Metadta: a Stata command for meta-analysis and meta-regression of diagnostic test accuracy data – a tutorial |
title_full_unstemmed | Metadta: a Stata command for meta-analysis and meta-regression of diagnostic test accuracy data – a tutorial |
title_short | Metadta: a Stata command for meta-analysis and meta-regression of diagnostic test accuracy data – a tutorial |
title_sort | metadta: a stata command for meta-analysis and meta-regression of diagnostic test accuracy data – a tutorial |
topic | Methodology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8962039/ https://www.ncbi.nlm.nih.gov/pubmed/35351195 http://dx.doi.org/10.1186/s13690-021-00747-5 |
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