Cargando…
Hyperspectral Imaging during Normothermic Machine Perfusion—A Functional Classification of Ex Vivo Kidneys Based on Convolutional Neural Networks
Facing an ongoing organ shortage in transplant medicine, strategies to increase the use of organs from marginal donors by objective organ assessment are being fostered. In this context, normothermic machine perfusion provides a platform for ex vivo organ evaluation during preservation. Consequently,...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8962340/ https://www.ncbi.nlm.nih.gov/pubmed/35203605 http://dx.doi.org/10.3390/biomedicines10020397 |
_version_ | 1784677779140247552 |
---|---|
author | Sommer, Florian Sun, Bingrui Fischer, Julian Goldammer, Miriam Thiele, Christine Malberg, Hagen Markgraf, Wenke |
author_facet | Sommer, Florian Sun, Bingrui Fischer, Julian Goldammer, Miriam Thiele, Christine Malberg, Hagen Markgraf, Wenke |
author_sort | Sommer, Florian |
collection | PubMed |
description | Facing an ongoing organ shortage in transplant medicine, strategies to increase the use of organs from marginal donors by objective organ assessment are being fostered. In this context, normothermic machine perfusion provides a platform for ex vivo organ evaluation during preservation. Consequently, analytical tools are emerging to determine organ quality. In this study, hyperspectral imaging (HSI) in the wavelength range of 550–995 nm was applied. Classification of 26 kidneys based on HSI was established using KidneyResNet, a convolutional neural network (CNN) based on the ResNet-18 architecture, to predict inulin clearance behavior. HSI preprocessing steps were implemented, including automated region of interest (ROI) selection, before executing the KidneyResNet algorithm. Training parameters and augmentation methods were investigated concerning their influence on the prediction. When classifying individual ROIs, the optimized KidneyResNet model achieved 84% and 62% accuracy in the validation and test set, respectively. With a majority decision on all ROIs of a kidney, the accuracy increased to 96% (validation set) and 100% (test set). These results demonstrate the feasibility of HSI in combination with KidneyResNet for non-invasive prediction of ex vivo kidney function. This knowledge of preoperative renal quality may support the organ acceptance decision. |
format | Online Article Text |
id | pubmed-8962340 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-89623402022-03-30 Hyperspectral Imaging during Normothermic Machine Perfusion—A Functional Classification of Ex Vivo Kidneys Based on Convolutional Neural Networks Sommer, Florian Sun, Bingrui Fischer, Julian Goldammer, Miriam Thiele, Christine Malberg, Hagen Markgraf, Wenke Biomedicines Article Facing an ongoing organ shortage in transplant medicine, strategies to increase the use of organs from marginal donors by objective organ assessment are being fostered. In this context, normothermic machine perfusion provides a platform for ex vivo organ evaluation during preservation. Consequently, analytical tools are emerging to determine organ quality. In this study, hyperspectral imaging (HSI) in the wavelength range of 550–995 nm was applied. Classification of 26 kidneys based on HSI was established using KidneyResNet, a convolutional neural network (CNN) based on the ResNet-18 architecture, to predict inulin clearance behavior. HSI preprocessing steps were implemented, including automated region of interest (ROI) selection, before executing the KidneyResNet algorithm. Training parameters and augmentation methods were investigated concerning their influence on the prediction. When classifying individual ROIs, the optimized KidneyResNet model achieved 84% and 62% accuracy in the validation and test set, respectively. With a majority decision on all ROIs of a kidney, the accuracy increased to 96% (validation set) and 100% (test set). These results demonstrate the feasibility of HSI in combination with KidneyResNet for non-invasive prediction of ex vivo kidney function. This knowledge of preoperative renal quality may support the organ acceptance decision. MDPI 2022-02-07 /pmc/articles/PMC8962340/ /pubmed/35203605 http://dx.doi.org/10.3390/biomedicines10020397 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Sommer, Florian Sun, Bingrui Fischer, Julian Goldammer, Miriam Thiele, Christine Malberg, Hagen Markgraf, Wenke Hyperspectral Imaging during Normothermic Machine Perfusion—A Functional Classification of Ex Vivo Kidneys Based on Convolutional Neural Networks |
title | Hyperspectral Imaging during Normothermic Machine Perfusion—A Functional Classification of Ex Vivo Kidneys Based on Convolutional Neural Networks |
title_full | Hyperspectral Imaging during Normothermic Machine Perfusion—A Functional Classification of Ex Vivo Kidneys Based on Convolutional Neural Networks |
title_fullStr | Hyperspectral Imaging during Normothermic Machine Perfusion—A Functional Classification of Ex Vivo Kidneys Based on Convolutional Neural Networks |
title_full_unstemmed | Hyperspectral Imaging during Normothermic Machine Perfusion—A Functional Classification of Ex Vivo Kidneys Based on Convolutional Neural Networks |
title_short | Hyperspectral Imaging during Normothermic Machine Perfusion—A Functional Classification of Ex Vivo Kidneys Based on Convolutional Neural Networks |
title_sort | hyperspectral imaging during normothermic machine perfusion—a functional classification of ex vivo kidneys based on convolutional neural networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8962340/ https://www.ncbi.nlm.nih.gov/pubmed/35203605 http://dx.doi.org/10.3390/biomedicines10020397 |
work_keys_str_mv | AT sommerflorian hyperspectralimagingduringnormothermicmachineperfusionafunctionalclassificationofexvivokidneysbasedonconvolutionalneuralnetworks AT sunbingrui hyperspectralimagingduringnormothermicmachineperfusionafunctionalclassificationofexvivokidneysbasedonconvolutionalneuralnetworks AT fischerjulian hyperspectralimagingduringnormothermicmachineperfusionafunctionalclassificationofexvivokidneysbasedonconvolutionalneuralnetworks AT goldammermiriam hyperspectralimagingduringnormothermicmachineperfusionafunctionalclassificationofexvivokidneysbasedonconvolutionalneuralnetworks AT thielechristine hyperspectralimagingduringnormothermicmachineperfusionafunctionalclassificationofexvivokidneysbasedonconvolutionalneuralnetworks AT malberghagen hyperspectralimagingduringnormothermicmachineperfusionafunctionalclassificationofexvivokidneysbasedonconvolutionalneuralnetworks AT markgrafwenke hyperspectralimagingduringnormothermicmachineperfusionafunctionalclassificationofexvivokidneysbasedonconvolutionalneuralnetworks |