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LONGL-Net: temporal correlation structure guided deep learning model to predict longitudinal age-related macular degeneration severity
Age-related macular degeneration (AMD) is the principal cause of blindness in developed countries, and its prevalence will increase to 288 million people in 2040. Therefore, automated grading and prediction methods can be highly beneficial for recognizing susceptible subjects to late-AMD and enablin...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8962776/ https://www.ncbi.nlm.nih.gov/pubmed/35360552 http://dx.doi.org/10.1093/pnasnexus/pgab003 |
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author | Ganjdanesh, Alireza Zhang, Jipeng Chew, Emily Y Ding, Ying Huang, Heng Chen, Wei |
author_facet | Ganjdanesh, Alireza Zhang, Jipeng Chew, Emily Y Ding, Ying Huang, Heng Chen, Wei |
author_sort | Ganjdanesh, Alireza |
collection | PubMed |
description | Age-related macular degeneration (AMD) is the principal cause of blindness in developed countries, and its prevalence will increase to 288 million people in 2040. Therefore, automated grading and prediction methods can be highly beneficial for recognizing susceptible subjects to late-AMD and enabling clinicians to start preventive actions for them. Clinically, AMD severity is quantified by Color Fundus Photographs (CFP) of the retina, and many machine-learning-based methods are proposed for grading AMD severity. However, few models were developed to predict the longitudinal progression status, i.e. predicting future late-AMD risk based on the current CFP, which is more clinically interesting. In this paper, we propose a new deep-learning-based classification model (LONGL-Net) that can simultaneously grade the current CFP and predict the longitudinal outcome, i.e. whether the subject will be in late-AMD in the future time-point. We design a new temporal-correlation-structure-guided Generative Adversarial Network model that learns the interrelations of temporal changes in CFPs in consecutive time-points and provides interpretability for the classifier's decisions by forecasting AMD symptoms in the future CFPs. We used about 30,000 CFP images from 4,628 participants in the Age-Related Eye Disease Study. Our classifier showed average 0.905 (95% CI: 0.886–0.922) AUC and 0.762 (95% CI: 0.733–0.792) accuracy on the 3-class classification problem of simultaneously grading current time-point's AMD condition and predicting late AMD progression of subjects in the future time-point. We further validated our model on the UK Biobank dataset, where our model showed average 0.905 accuracy and 0.797 sensitivity in grading 300 CFP images. |
format | Online Article Text |
id | pubmed-8962776 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-89627762022-03-29 LONGL-Net: temporal correlation structure guided deep learning model to predict longitudinal age-related macular degeneration severity Ganjdanesh, Alireza Zhang, Jipeng Chew, Emily Y Ding, Ying Huang, Heng Chen, Wei PNAS Nexus Biological, Health, and Medical Sciences Age-related macular degeneration (AMD) is the principal cause of blindness in developed countries, and its prevalence will increase to 288 million people in 2040. Therefore, automated grading and prediction methods can be highly beneficial for recognizing susceptible subjects to late-AMD and enabling clinicians to start preventive actions for them. Clinically, AMD severity is quantified by Color Fundus Photographs (CFP) of the retina, and many machine-learning-based methods are proposed for grading AMD severity. However, few models were developed to predict the longitudinal progression status, i.e. predicting future late-AMD risk based on the current CFP, which is more clinically interesting. In this paper, we propose a new deep-learning-based classification model (LONGL-Net) that can simultaneously grade the current CFP and predict the longitudinal outcome, i.e. whether the subject will be in late-AMD in the future time-point. We design a new temporal-correlation-structure-guided Generative Adversarial Network model that learns the interrelations of temporal changes in CFPs in consecutive time-points and provides interpretability for the classifier's decisions by forecasting AMD symptoms in the future CFPs. We used about 30,000 CFP images from 4,628 participants in the Age-Related Eye Disease Study. Our classifier showed average 0.905 (95% CI: 0.886–0.922) AUC and 0.762 (95% CI: 0.733–0.792) accuracy on the 3-class classification problem of simultaneously grading current time-point's AMD condition and predicting late AMD progression of subjects in the future time-point. We further validated our model on the UK Biobank dataset, where our model showed average 0.905 accuracy and 0.797 sensitivity in grading 300 CFP images. Oxford University Press 2022-03-19 /pmc/articles/PMC8962776/ /pubmed/35360552 http://dx.doi.org/10.1093/pnasnexus/pgab003 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the National Academy of Sciences. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Biological, Health, and Medical Sciences Ganjdanesh, Alireza Zhang, Jipeng Chew, Emily Y Ding, Ying Huang, Heng Chen, Wei LONGL-Net: temporal correlation structure guided deep learning model to predict longitudinal age-related macular degeneration severity |
title | LONGL-Net: temporal correlation structure guided deep learning model to predict longitudinal age-related macular degeneration severity |
title_full | LONGL-Net: temporal correlation structure guided deep learning model to predict longitudinal age-related macular degeneration severity |
title_fullStr | LONGL-Net: temporal correlation structure guided deep learning model to predict longitudinal age-related macular degeneration severity |
title_full_unstemmed | LONGL-Net: temporal correlation structure guided deep learning model to predict longitudinal age-related macular degeneration severity |
title_short | LONGL-Net: temporal correlation structure guided deep learning model to predict longitudinal age-related macular degeneration severity |
title_sort | longl-net: temporal correlation structure guided deep learning model to predict longitudinal age-related macular degeneration severity |
topic | Biological, Health, and Medical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8962776/ https://www.ncbi.nlm.nih.gov/pubmed/35360552 http://dx.doi.org/10.1093/pnasnexus/pgab003 |
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