Cargando…

Thermometer: a webserver to predict protein thermal stability

MOTIVATION: Thermal properties of proteins are of great importance for a number of theoretical and practical implications. Predicting the thermal stability of a protein is a difficult and still scarcely addressed task. RESULTS: Here, we introduce Thermometer, a webserver to assess the thermal stabil...

Descripción completa

Detalles Bibliográficos
Autores principales:	Miotto, Mattia, Armaos, Alexandros, Di Rienzo, Lorenzo, Ruocco, Giancarlo, Milanetti, Edoardo, Tartaglia, Gian Gaetano
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2022
Materias:	Applications Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8963285/ https://www.ncbi.nlm.nih.gov/pubmed/35020787 http://dx.doi.org/10.1093/bioinformatics/btab868

Ejemplares similares

omiXcore: a web server for prediction of protein interactions with large RNA
por: Armaos, Alexandros, et al.
Publicado: (2017)

Spatial organization of hydrophobic and charged residues affects protein thermal stability and binding affinity
por: Desantis, Fausta, et al.
Publicado: (2022)

CROSSalive: a web server for predicting the in vivo structure of RNA molecules
por: Ponti, Riccardo Delli, et al.
Publicado: (2019)

ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli
por: Agostini, Federico, et al.
Publicado: (2014)

Computational optimization of angiotensin-converting enzyme 2 for SARS-CoV-2 Spike molecular recognition
por: Di Rienzo, Lorenzo, et al.
Publicado: (2021)

Insights on protein thermal stability: a graph representation of molecular interactions
por: Miotto, Mattia, et al.
Publicado: (2019)

Computational structural-based GPCR optimization for user-defined ligand: Implications for the development of biosensors
por: Di Rienzo, Lorenzo, et al.
Publicado: (2023)

Exploring the Association Between Sialic Acid and SARS-CoV-2 Spike Protein Through a Molecular Dynamics-Based Approach
por: Bò, Leonardo, et al.
Publicado: (2021)

Does blood type affect the COVID-19 infection pattern?
por: Miotto, Mattia, et al.
Publicado: (2021)

Investigating the competition between ACE2 natural molecular interactors and SARS-CoV-2 candidate inhibitors
por: Milanetti, Edoardo, et al.
Publicado: (2023)

A Computational Approach to Investigate TDP-43 RNA-Recognition Motif 2 C-Terminal Fragments Aggregation in Amyotrophic Lateral Sclerosis
por: Grassmann, Greta, et al.
Publicado: (2021)

The PRALINE database: protein and Rna humAn singLe nucleotIde variaNts in condEnsates
por: Vandelli, Andrea, et al.
Publicado: (2023)

2D Zernike polynomial expansion: Finding the protein-protein binding regions
por: Milanetti, Edoardo, et al.
Publicado: (2020)

Characterizing Hydropathy of Amino Acid Side Chain in a Protein Environment by Investigating the Structural Changes of Water Molecules Network
por: Di Rienzo, Lorenzo, et al.
Publicado: (2021)

Molecular Mechanisms Behind Anti SARS-CoV-2 Action of Lactoferrin
por: Miotto, Mattia, et al.
Publicado: (2021)

A novel computational strategy for defining the minimal protein molecular surface representation
por: Grassmann, Greta, et al.
Publicado: (2022)

TGPred: a tumor gene prediction webserver for analyzing structural and functional impacts of variants
por: Liu, Jixiang, et al.
Publicado: (2020)

Inferring the stabilization effects of SARS-CoV-2 variants on the binding with ACE2 receptor
por: Miotto, Mattia, et al.
Publicado: (2022)

Differences in the organization of interface residues tunes the stability of the SARS-CoV-2 spike-ACE2 complex
por: Miotto, Mattia, et al.
Publicado: (2023)

NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads
por: Rosen, Gail L., et al.
Publicado: (2011)

AnglerFish: a webserver for defining the geometry of α-helices in membrane proteins
por: Colledge, Matthew, et al.
Publicado: (2017)

Shape Complementarity Optimization of Antibody–Antigen Interfaces: The Application to SARS-CoV-2 Spike Protein
por: De Lauro, Alfredo, et al.
Publicado: (2022)

Electrostatic complementarity at the interface drives transient protein-protein interactions
por: Grassmann, Greta, et al.
Publicado: (2023)

RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs
por: Antczak, Maciej, et al.
Publicado: (2019)

The LCD-Composer webserver: high-specificity identification and functional analysis of low-complexity domains in proteins
por: Cascarina, Sean M, et al.
Publicado: (2022)

EXPANSION: a webserver to explore the functional consequences of protein-coding alternative splice variants in cancer genomics
por: Arora, Chakit, et al.
Publicado: (2023)

Quantitative Description of Surface Complementarity of Antibody-Antigen Interfaces
por: Di Rienzo, Lorenzo, et al.
Publicado: (2021)

AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development
por: Jornod, Florence, et al.
Publicado: (2021)

MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database
por: Leray, Matthieu, et al.
Publicado: (2018)

catRAPID omics: a web server for large-scale prediction of protein–RNA interactions
por: Agostini, Federico, et al.
Publicado: (2013)

Structural analysis of SARS-CoV-2 genome and predictions of the human interactome
por: Vandelli, Andrea, et al.
Publicado: (2020)

catRAPID signature: identification of ribonucleoproteins and RNA-binding regions
por: Livi, Carmen Maria, et al.
Publicado: (2016)

Binding site identification of G protein-coupled receptors through a 3D Zernike polynomials-based method: application to C. elegans olfactory receptors
por: Di Rienzo, Lorenzo, et al.
Publicado: (2022)

Lactoferrin Inhibition of the Complex Formation between ACE2 Receptor and SARS CoV-2 Recognition Binding Domain
por: Piacentini, Roberta, et al.
Publicado: (2022)

proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking
por: Ambrosetti, Francesco, et al.
Publicado: (2020)

Looking for protein stabilizing drugs with thermal shift assay
por: Andreotti, Giuseppina, et al.
Publicado: (2015)

Probing TDP-43 condensation using an in silico designed aptamer
por: Zacco, Elsa, et al.
Publicado: (2022)

A novel strategy for molecular interfaces optimization: The case of Ferritin-Transferrin receptor interaction
por: Di Rienzo, Lorenzo, et al.
Publicado: (2020)

In-Silico Evidence for a Two Receptor Based Strategy of SARS-CoV-2
por: Milanetti, Edoardo, et al.
Publicado: (2021)

A Method for RNA Structure Prediction Shows Evidence for Structure in lncRNAs
por: Delli Ponti, Riccardo, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_r4fe1ft8hu49ue75194mf90ns8