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A Hyperspectral Data 3D Convolutional Neural Network Classification Model for Diagnosis of Gray Mold Disease in Strawberry Leaves
Gray mold disease is one of the most frequently occurring diseases in strawberries. Given that it spreads rapidly, rapid countermeasures are necessary through the development of early diagnosis technology. In this study, hyperspectral images of strawberry leaves that were inoculated with gray mold f...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8963811/ https://www.ncbi.nlm.nih.gov/pubmed/35360322 http://dx.doi.org/10.3389/fpls.2022.837020 |
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author | Jung, Dae-Hyun Kim, Jeong Do Kim, Ho-Youn Lee, Taek Sung Kim, Hyoung Seok Park, Soo Hyun |
author_facet | Jung, Dae-Hyun Kim, Jeong Do Kim, Ho-Youn Lee, Taek Sung Kim, Hyoung Seok Park, Soo Hyun |
author_sort | Jung, Dae-Hyun |
collection | PubMed |
description | Gray mold disease is one of the most frequently occurring diseases in strawberries. Given that it spreads rapidly, rapid countermeasures are necessary through the development of early diagnosis technology. In this study, hyperspectral images of strawberry leaves that were inoculated with gray mold fungus to cause disease were taken; these images were classified into healthy and infected areas as seen by the naked eye. The areas where the infection spread after time elapsed were classified as the asymptomatic class. Square regions of interest (ROIs) with a dimensionality of 16 × 16 × 150 were acquired as training data, including infected, asymptomatic, and healthy areas. Then, 2D and 3D data were used in the development of a convolutional neural network (CNN) classification model. An effective wavelength analysis was performed before the development of the CNN model. Further, the classification model that was developed with 2D training data showed a classification accuracy of 0.74, while the model that used 3D data acquired an accuracy of 0.84; this indicated that the 3D data produced slightly better performance. When performing classification between healthy and asymptomatic areas for developing early diagnosis technology, the two CNN models showed a classification accuracy of 0.73 with regards to the asymptomatic ones. To increase accuracy in classifying asymptomatic areas, a model was developed by smoothing the spectrum data and expanding the first and second derivatives; the results showed that it was possible to increase the asymptomatic classification accuracy to 0.77 and reduce the misclassification of asymptomatic areas as healthy areas. Based on these results, it is concluded that the proposed 3D CNN classification model can be used as an early diagnosis sensor of gray mold diseases since it produces immediate on-site analysis results of hyperspectral images of leaves. |
format | Online Article Text |
id | pubmed-8963811 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89638112022-03-30 A Hyperspectral Data 3D Convolutional Neural Network Classification Model for Diagnosis of Gray Mold Disease in Strawberry Leaves Jung, Dae-Hyun Kim, Jeong Do Kim, Ho-Youn Lee, Taek Sung Kim, Hyoung Seok Park, Soo Hyun Front Plant Sci Plant Science Gray mold disease is one of the most frequently occurring diseases in strawberries. Given that it spreads rapidly, rapid countermeasures are necessary through the development of early diagnosis technology. In this study, hyperspectral images of strawberry leaves that were inoculated with gray mold fungus to cause disease were taken; these images were classified into healthy and infected areas as seen by the naked eye. The areas where the infection spread after time elapsed were classified as the asymptomatic class. Square regions of interest (ROIs) with a dimensionality of 16 × 16 × 150 were acquired as training data, including infected, asymptomatic, and healthy areas. Then, 2D and 3D data were used in the development of a convolutional neural network (CNN) classification model. An effective wavelength analysis was performed before the development of the CNN model. Further, the classification model that was developed with 2D training data showed a classification accuracy of 0.74, while the model that used 3D data acquired an accuracy of 0.84; this indicated that the 3D data produced slightly better performance. When performing classification between healthy and asymptomatic areas for developing early diagnosis technology, the two CNN models showed a classification accuracy of 0.73 with regards to the asymptomatic ones. To increase accuracy in classifying asymptomatic areas, a model was developed by smoothing the spectrum data and expanding the first and second derivatives; the results showed that it was possible to increase the asymptomatic classification accuracy to 0.77 and reduce the misclassification of asymptomatic areas as healthy areas. Based on these results, it is concluded that the proposed 3D CNN classification model can be used as an early diagnosis sensor of gray mold diseases since it produces immediate on-site analysis results of hyperspectral images of leaves. Frontiers Media S.A. 2022-03-11 /pmc/articles/PMC8963811/ /pubmed/35360322 http://dx.doi.org/10.3389/fpls.2022.837020 Text en Copyright © 2022 Jung, Kim, Kim, Lee, Kim and Park. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Jung, Dae-Hyun Kim, Jeong Do Kim, Ho-Youn Lee, Taek Sung Kim, Hyoung Seok Park, Soo Hyun A Hyperspectral Data 3D Convolutional Neural Network Classification Model for Diagnosis of Gray Mold Disease in Strawberry Leaves |
title | A Hyperspectral Data 3D Convolutional Neural Network Classification Model for Diagnosis of Gray Mold Disease in Strawberry Leaves |
title_full | A Hyperspectral Data 3D Convolutional Neural Network Classification Model for Diagnosis of Gray Mold Disease in Strawberry Leaves |
title_fullStr | A Hyperspectral Data 3D Convolutional Neural Network Classification Model for Diagnosis of Gray Mold Disease in Strawberry Leaves |
title_full_unstemmed | A Hyperspectral Data 3D Convolutional Neural Network Classification Model for Diagnosis of Gray Mold Disease in Strawberry Leaves |
title_short | A Hyperspectral Data 3D Convolutional Neural Network Classification Model for Diagnosis of Gray Mold Disease in Strawberry Leaves |
title_sort | hyperspectral data 3d convolutional neural network classification model for diagnosis of gray mold disease in strawberry leaves |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8963811/ https://www.ncbi.nlm.nih.gov/pubmed/35360322 http://dx.doi.org/10.3389/fpls.2022.837020 |
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